View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2921_high_13 (Length: 203)

Name: NF2921_high_13
Description: NF2921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2921_high_13
NF2921_high_13
[»] chr3 (8 HSPs)
chr3 (1-188)||(9401817-9402003)
chr3 (1-114)||(9432383-9432496)
chr3 (1-75)||(9356943-9357017)
chr3 (1-98)||(9420149-9420242)
chr3 (131-185)||(9432343-9432397)
chr3 (35-92)||(9340077-9340134)
chr3 (1-40)||(9347135-9347174)
chr3 (38-95)||(9335267-9335324)
[»] chr6 (4 HSPs)
chr6 (35-83)||(9159859-9159907)
chr6 (35-95)||(9170509-9170569)
chr6 (35-97)||(7046419-7046481)
chr6 (35-84)||(7040933-7040982)
[»] chr1 (1 HSPs)
chr1 (55-95)||(4439441-4439481)
[»] chr2 (1 HSPs)
chr2 (62-90)||(16629600-16629628)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 9402003 - 9401817
Alignment:
Q  1 tgagggggtgatttgtatgataagatgtaacaatcaatgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgtttagcagctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9402003 tgagggggtgatttgtatgataagatgtaacaatcaatgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgtttagcagctaa 9401904  T
Q  101 tccctaattacatannnnnnngaaaaagacatccctaattacatattgatatgagaagataagctttctggtggatttttcaactctt 188  Q
    ||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9401903 tccctaattacatatttttttg-aaaagacatccctaattacatattgatatgagaagataagctttctggtggatttttcaactctt 9401817  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 9432496 - 9432383
Alignment:
Q  1 tgagggggtgatttgtatgataagatgtaacaatcaatgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgtttagcagctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9432496 tgagggggtgatttgtatgataagatgtaacaatcaatgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgtttagcagctaa 9432397  T
Q  101 tccctaattacata 114  Q
    ||||||||||||||    
T  9432396 tccctaattacata 9432383  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9357017 - 9356943
Alignment:
Q  1 tgagggggtgatttgtatgataagatgtaacaatcaatgttgatgagcttgatcatcttcttttattgttacttt 75  Q
    ||||||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9357017 tgaggggataatctgtatgataagatgcaacaatcaatgttgatgagcttgatcatcttcttttattgttacttt 9356943  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9420242 - 9420149
Alignment:
Q  1 tgagggggtgatttgtatgataagatgtaacaatcaatgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgtttagcagct 98  Q
    ||||| ||| ||||||||||||||||||||||||    |||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||    
T  9420242 tgaggaggtaatttgtatgataagatgtaacaat----gttgatgagcgtgatcatcttattttatttttacttttgcagactatatgtttatcagct 9420149  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 9432397 - 9432343
Alignment:
Q  131 atccctaattacatattgatatgagaagataagctttctggtggatttttcaact 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9432397 atccctaattacatattgatatgagaagataagctttctggtggatttttcaact 9432343  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 9340134 - 9340077
Alignment:
Q  35 caatgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgttta 92  Q
    |||||||| || | ||||| ||||||||| ||||||||||||||||||||||||||||    
T  9340134 caatgttgttgggtttgattatcttctttcattgttacttttgcagactatatgttta 9340077  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9347174 - 9347135
Alignment:
Q  1 tgagggggtgatttgtatgataagatgtaacaatcaatgt 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9347174 tgagggggtgatttgtatgataaggtgtaacaatcaatgt 9347135  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 9335324 - 9335267
Alignment:
Q  38 tgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgtttagca 95  Q
    |||||||||| ||||| |||||||||||||| ||||||| ||||| | ||||||||||    
T  9335324 tgttgatgagtttgattatcttcttttattgctacttttccagacaacatgtttagca 9335267  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 9159859 - 9159907
Alignment:
Q  35 caatgttgatgagcttgatcatcttcttttattgttacttttgcagact 83  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9159859 caatgttgatgagcttgattatcttcttttattgttacttttgcagact 9159907  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 9170569 - 9170509
Alignment:
Q  35 caatgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgtttagca 95  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||    
T  9170569 caatgttgatgagcttgattatcttcttttattgttactttttcagactacatgttcagca 9170509  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 7046481 - 7046419
Alignment:
Q  35 caatgttgatgagcttgatcatcttcttttattgttacttttgcagactatatgtttagcagc 97  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||| || ||||| ||||||    
T  7046481 caatgttgctgggcttgattatcttcttttattgttacttttgcagattacatgttcagcagc 7046419  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 7040982 - 7040933
Alignment:
Q  35 caatgttgatgagcttgatcatcttcttttattgttacttttgcagacta 84  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  7040982 caatgttgatgggattgattatcttcttttattgttacttttgcagacta 7040933  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 4439481 - 4439441
Alignment:
Q  55 atcttcttttattgttacttttgcagactatatgtttagca 95  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  4439481 atcttctttccttgttacttttgcagactatatgtttagca 4439441  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 16629628 - 16629600
Alignment:
Q  62 tttattgttacttttgcagactatatgtt 90  Q
    |||||||||||||||||||||||||||||    
T  16629628 tttattgttacttttgcagactatatgtt 16629600  T

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