View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2921_low_12 (Length: 240)
Name: NF2921_low_12
Description: NF2921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2921_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16921301 - 16921537
Alignment:
| Q |
1 |
agatttcacatcatcacaatcttttctcgttccgcctcttcttccattaacaactcatcaagaacaacaatttgatttctcttcaacacaaactcatcat |
100 |
Q |
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| T |
16921301 |
agatttcacatcatcacaatcttttctcgttccgccgcttcttccattaacaactcatcaagaacaacaatttgatttctcttcaacacaaactcatcat |
16921400 |
T |
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| Q |
101 |
ctttctggtttgaaagggctaccacaatatcaaactgatcctatttcttcggcagcgccgcttatgagtgcttcattcccttctgtatttgaagatgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16921401 |
ctttctggtttgaaagggctaccacaatatcaaactgatcctatttcttcggcagcgccgcttatgagtgcttcattcccttctgtatttgaagatgatt |
16921500 |
T |
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| Q |
201 |
gcatatcttcaattccttcttattctcctccttgttc |
237 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
16921501 |
gcatatcttcaattccttcttattctccttcttgttc |
16921537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 2656388 - 2656425
Alignment:
| Q |
168 |
gtgcttcattcccttctgtatttgaagatgattgcata |
205 |
Q |
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|||||| |||||||||||||||||||||| |||||||| |
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| T |
2656388 |
gtgctttattcccttctgtatttgaagattattgcata |
2656425 |
T |
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