View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2921_low_2 (Length: 512)
Name: NF2921_low_2
Description: NF2921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2921_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 27744315 - 27744539
Alignment:
| Q |
15 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct |
114 |
Q |
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| T |
27744315 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct |
27744414 |
T |
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| Q |
115 |
cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctg |
214 |
Q |
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| T |
27744415 |
cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctg |
27744514 |
T |
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| Q |
215 |
attttcttcgccattactacaaagt |
239 |
Q |
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| T |
27744515 |
attttcttcgccattactacaaagt |
27744539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 260 - 499
Target Start/End: Complemental strand, 36253714 - 36253475
Alignment:
| Q |
260 |
ttgacattaacaatgacgattcagacaatgaaaagtttgacaatgacaatgttgaagaccaaatggacaatgtggatgatgatgaaaaggaccattttct |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36253714 |
ttgacattaacaatgacgattcagacaatgaaaagtttgacaatgacaatgttgaagaccaaatggacaatgtggatgatgacgaaaaggaccattttct |
36253615 |
T |
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| Q |
360 |
aggtccttacaatgtggatgaagaccaaatggacaacattcccattgcacttgccgtttctgatgcatcccccgttgtgacggtggccatggctgccccc |
459 |
Q |
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| T |
36253614 |
atgtccatacaatgtggatgaagaccaaatggacaatattcccattgcacttgccgtttctgatgcatcccccgttgtgacggtggccatggctgccccc |
36253515 |
T |
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| Q |
460 |
gcagatgacacaaacgcggcaacaaacacagccaccacct |
499 |
Q |
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| T |
36253514 |
gcagatgacacaaacgcggcaacaaacacagccaccacct |
36253475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 49513337 - 49513388
Alignment:
| Q |
188 |
tagaaaacaacctcactttaaaatctgattttcttcgccattactacaaagt |
239 |
Q |
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| T |
49513337 |
tagaaaacaacctcacttttaaatctgattttcttcgccattactacaaagt |
49513388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 49513261 - 49513321
Alignment:
| Q |
15 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcga |
75 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||| |
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| T |
49513261 |
gaagaagaagcttatcaatgatcctcggtttgtaggagtgctcacagaccctctttttcga |
49513321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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