View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2921_low_3 (Length: 430)
Name: NF2921_low_3
Description: NF2921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2921_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 43208860 - 43208447
Alignment:
| Q |
11 |
cacagacagaacaaaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctgactg |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43208860 |
cacaaacagaacaaaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctaactg |
43208761 |
T |
|
| Q |
111 |
attagaatttagaagtcacccatcccaaaactcgtgggcatcagaaaggttgaattcgagcaatgacactgtccatgaagataataaaaggtatattaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208760 |
attagaatttagaagtcacccatcccaaaactcgtgggcatcagaaaggttgaatttgagcaatgacactgtccatgaagataataaaaggtatattaag |
43208661 |
T |
|
| Q |
211 |
agacaaatcctatcctctacatgcatatgatattttcatgtcctaatccacataaacagcttcaataccgagcatctccaatatcgacacaacaagcata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208660 |
agacaaatcctatcctctacatgcatatgatattttcatgtcctaatccacataaacagcttcaataccgagcatctccaatatcgacacaacaagcata |
43208561 |
T |
|
| Q |
311 |
aaattaccttgaagaaagtctcagcagaactattgaattttcgtgataaatctcgtatccatatatacaaatatattatcaagcacgttaaataattgtc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208560 |
aaattaccttgaagaaagtctcagcagaactattgaattttcgtgataaatctcgtatccatatatacaaatatattatcaagcacgttaaataattgtc |
43208461 |
T |
|
| Q |
411 |
aaatt-tgatgatg |
423 |
Q |
| |
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||||| |||||||| |
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| T |
43208460 |
aaattatgatgatg |
43208447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 43188509 - 43188279
Alignment:
| Q |
11 |
cacagacagaacaaaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctgactg |
110 |
Q |
| |
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|||| |||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||| ||| |
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| T |
43188509 |
cacaaacagaacaaaacacacagaagtatcacaaagttgaattcaaatggccggcaaataaagagcaagattgatgaggggcaaatgctacacctagctg |
43188410 |
T |
|
| Q |
111 |
attagaatttagaagtcacccatcccaaaactcgtgggcatcagaaaggttgaattcgagcaatgacactgtccatgaagataataaaaggtatattaag |
210 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
43188409 |
attagaatttagaagtcacccatcccaaaacatgcgggcatcagaaaggttgaattcgagcaatgaaactgtccatgaagataataaaaggcatattaag |
43188310 |
T |
|
| Q |
211 |
agacaaatcctatcctctacatgcatatgat |
241 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43188309 |
agacaaatcctatcctctacatgcatatgat |
43188279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 234 - 423
Target Start/End: Complemental strand, 43187888 - 43187697
Alignment:
| Q |
234 |
catatgatattttcatgtcctaatccacataaacagcttcaataccgag-catctccaatatcgacacaacaagcataaaattaccttgaagaaagtctc |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||||||| | |
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| T |
43187888 |
catatgatattttcatgtcctaatccacataaacagcttcaataccttggcatctccaatatcaacaaaacaagcataaaattaccttgaagaaagtccc |
43187789 |
T |
|
| Q |
333 |
agcagaactattgaattttcgtgataaatctcgtatccatatatacaaatatattatcaagcacgttaaataattgtcaaatt-tgatgatg |
423 |
Q |
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||||| ||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
43187788 |
agcagtgctactgaatttttgtgacaaatctcgtatccatatatacaaatacattatcaagcacgttaaataattgtcaaattatgatgatg |
43187697 |
T |
|
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