View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2921_low_4 (Length: 408)
Name: NF2921_low_4
Description: NF2921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2921_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 24751320 - 24751684
Alignment:
| Q |
9 |
gagatgaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcccgagatatgattaagcactgtaagctaggtaaggcgcccgatatca |
108 |
Q |
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| T |
24751320 |
gagatcaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcacgagatatgattaagc---------taagtaaggcgcccaatatca |
24751410 |
T |
|
| Q |
109 |
tatggaatctttgaggaaataacgtttttggagagatctatgatttggagaaaattaagggatgcgagacattcatggatatttcccaaaatccccttcc |
208 |
Q |
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| T |
24751411 |
tatggaatctttgaggaaataaggtttttggagagatcgatgatttggagaaaattaaggtatgcgagacattcagggatatttcccaaaatccccttcc |
24751510 |
T |
|
| Q |
209 |
agttggaaatggtaatgc----tatagagttgggtcaggttgaaaattgacggggagatgtgtccgttcatgtatccacttttagactttagtggttttg |
304 |
Q |
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| T |
24751511 |
agttggaaatggtaatgctagatagagagttgtgttaggttgcaaattgagggggagatgtgtccgttcatgtatccacttttagacattagttattttg |
24751610 |
T |
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| Q |
305 |
gtgtgttttgtagtggcagtggttgtctctgaccatgaggcaagggagtatgatatcagcgatgtgatgtgtgg |
378 |
Q |
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| T |
24751611 |
gtgtgttttgtagtggcagtggttgtcactgaccgtgaagctagggagtatgatatccgcgatgccatgtgtgg |
24751684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 24766459 - 24766746
Alignment:
| Q |
9 |
gagatgaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcccgagatatgatta------------agcactgtaagctaggtaagg |
96 |
Q |
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| T |
24766459 |
gagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttccagagatatgattgtctgcaaggttgagcaccgtaagttgagtaaga |
24766558 |
T |
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| Q |
97 |
cgcccgatatcatatggaatctttgaggaaataacgtttttggagagatctatgatttggagaaaattaagggatgcgagacattcatggatatttccca |
196 |
Q |
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| T |
24766559 |
cgccctatatcatatggaatctttccggaaataacatttccagagagatctatgatttggagaaaatcgagggttgtgatgcatccagggatatttcccg |
24766658 |
T |
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| Q |
197 |
aaatccccttccagttggaaatggtaatgctatagagttgggtcaggttgaaaattgacggggagatgtgtccgttcatgtatccact |
284 |
Q |
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| T |
24766659 |
aaatacccttccaatcggagatggtaatgctagatagttgtgttaggttgcaaattgatggggagatgtgtccggtcatgtatccact |
24766746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 51501134 - 51500843
Alignment:
| Q |
9 |
gagatgaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcccgagatatga------------ttaagcactgtaagctaggtaagg |
96 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| || ||||| |||||| ||||| |
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| T |
51501134 |
gagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttcctgagatatgattgtctgcaaggttgagcaccataagctgagtaaga |
51501035 |
T |
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| Q |
97 |
cgcccgatatcatatggaatctttgaggaaataacgtttttggagagatctatgatttggagaaaattaagggatgcgagacattca-tggatatttccc |
195 |
Q |
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||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| || | || || ||| || ||||||| ||| |
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| T |
51501034 |
cgccctatatcatatggaatctttccggaaataagacttccggagagatctatgatttggagaaaattgagagttgtgatgcatccaggggatattcccc |
51500935 |
T |
|
| Q |
196 |
aaaatccccttccagttggaaatggtaatgctatagagttgggtcaggttgaaaattgacggggagatgtgtccgttcatgtatccactttt |
287 |
Q |
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|||| |||||||||| ||| | |||||||||| |||| | || |||||| ||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
51500934 |
gaaatgcccttccagtcggagacggtaatgctagagagccgtgttaggttgcaaattgatggggagatgtgtccggtcatgtatccattttt |
51500843 |
T |
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