View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2921_low_5 (Length: 395)
Name: NF2921_low_5
Description: NF2921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2921_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 1853651 - 1853935
Alignment:
| Q |
13 |
aatatcactatgcaaataggcaacattccaattcatggccaatgcaagaaagttttgtgattccggacggagacgaaccacctcctaatatggaaacaaa |
112 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1853651 |
aatatcactatgcaaatagacaacattctaattcatggccaatgcaagaaagttttgtgattccggacggagacgaaccacctcctaatatggaaacaaa |
1853750 |
T |
|
| Q |
113 |
aacaccttcacaaaggaaaacatatccttacacaaacaaagaattggaaatgttggaaaaaacaagagataaaggtttctatgaaacaaatattttccct |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1853751 |
aacacctacacaaaggaaaacatatccttacacaaacaaagaattggaaatgttggaaaaaacaagagataacggtttctatgaaacaaatattttccct |
1853850 |
T |
|
| Q |
213 |
ccgcctgtgccgataaatagacaaacagaaagtacaatttcaaagcacaatcgcgcatacttgaacatgttagacaaaagttatg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1853851 |
ccgcctgtgccgataaatagacaaacagaaagtacaatttcaaagcacaatcgtgcatacttgaacatgttagacaaaagttatg |
1853935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University