View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2921_low_6 (Length: 339)
Name: NF2921_low_6
Description: NF2921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2921_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 37451516 - 37451194
Alignment:
| Q |
1 |
catcattcatcagtatttcacccaagtcacctaagtatttttcgtcagaacctcctgtgagttgttgtggtgctcgttcttggctagcttccactattcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37451516 |
catcattcatcagtatttcacccaagtcacctaagtatttttcgtcagaacctcctgtgagttgttgtggtgctcgttcttggctagcttccactattcc |
37451417 |
T |
|
| Q |
101 |
aacaaacaagtggcgcacttaaaaatttgagcacctgtctcttcaatttgccgccaaagtctcaagttcgtatttttacaaaggctcctccaaaggatgg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37451416 |
aacaaacaagtggcacacttaaaaatttgagcacctgtctcttcaatttgccgccaaagtttcaagttcgtatttttacaaaggctcctccaaaggatgg |
37451317 |
T |
|
| Q |
201 |
aaaaaactcgctctgtgatacttgtagttggtgcaacagcgtgaaaataacaacattcatgttataattttcctgcagtgcattatcaatcgtttcccac |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37451316 |
aaaaagctcgctctgtgatacttgtagttggtgcaacagcgtgaaaataacaacattcatgttataattttcctgcagtgcattatcaatcgtttcccac |
37451217 |
T |
|
| Q |
301 |
aaagtggatgcgcggcgcacttg |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37451216 |
aaagtggatgcgcggcgcacttg |
37451194 |
T |
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