View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2922_high_11 (Length: 311)
Name: NF2922_high_11
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_high_11 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0453 (1 HSPs) |
| | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0035 (2 HSPs) |
| | |
|
| [»] scaffold0334 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
| [»] scaffold1407 (1 HSPs) |
| | |
|
| [»] scaffold0158 (2 HSPs) |
| | |
|
| [»] scaffold0226 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 15941886 - 15941603
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15941886 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcatgttacaatttctaaa |
15941787 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15941786 |
catacaacttaacagagtatcatcggtacgacgttcgtcacattccggactctataaaaatctactcagacatggtaattataataaacacacttttatg |
15941687 |
T |
|
| Q |
212 |
cataacattcatcatcattgaaacagagaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatacttt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15941686 |
cataacattcatcatcattgaaacagagaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatacttt |
15941603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 15933543 - 15933261
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15933543 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
15933444 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
15933443 |
catacaacttaacagagtatcatcggtacgacgttcgtcacattccggactctataaaaatctacgcagacatggtaattataa-aaacacacttttatg |
15933345 |
T |
|
| Q |
212 |
cataacattcatcatcattgaaacagagaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatacttt |
295 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15933344 |
cataacattcatcatcattgaaacacagaaattaaaagaacaaaatgaatgagcagaaactaacctattaatgatggatacttt |
15933261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 7159587 - 7159401
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
7159587 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcttgttacaatttataat |
7159488 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataa |
198 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||| || |||||||||| ||| ||| |||||||||| | |||||||||||||||||| |
|
|
| T |
7159487 |
catacaatttaacagagtaccattggtacgacattcatcacattccgaactatatggaaatctactcaaacatggtaattataataa |
7159401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 22075299 - 22075225
Alignment:
| Q |
29 |
ttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaa |
103 |
Q |
| |
|
||||||||| |||| | |||||||||||||||||||||| || ||||||| |||||||| ||| |||||||||| |
|
|
| T |
22075299 |
ttatttcagttttcactgtaaatattcatcgttaaaaattaggattttcacgcttaaaaataatccctgttacaa |
22075225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 11164982 - 11164699
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11164982 |
atgaaactggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
11164883 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttatg |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11164882 |
catacaacttaacagagtatcatcagtacgacattcgtcacattccagaccctatggaaatctactcagacatggtaattataataaacacacttttatt |
11164783 |
T |
|
| Q |
212 |
cataacattcatcatcattgaaacagagaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatacttt |
295 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11164782 |
cataacattcatcatcattgaaagagagaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatgggtacttt |
11164699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 16636497 - 16636299
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||||||||||||||||||| || |||||| |||||||| ||||||||||| |||||||||||| ||||||||| |||| |||||||||| ||| |
|
|
| T |
16636497 |
atgaaaccggtatcactttattccatctttcgttgtaaatatccatcgttaaaactcagaattttcaaacttaaaaataattactgttacaatcagtaat |
16636398 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctact--tagacatggtaattataataaacacactttt |
208 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||| || || |||||| |
|
|
| T |
16636397 |
catacaacttaacatattatcattcgtacgacgttcatcacattccggactctataaaaatctactcaaaaacatggtaattataacaagcatactttt |
16636299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 14224365 - 14224192
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||| || || ||| ||| |||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
14224365 |
atgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaagtcagaatttttagactttaaaaataattcctgttacaatttctaa |
14224266 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacat |
184 |
Q |
| |
|
||||||| ||||||||| | ||| |||||||| || |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
14224265 |
tcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatggaaatctactcagacat |
14224192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 14234460 - 14234287
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||| || || ||| ||| |||||||||| |||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
14234460 |
atgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaagtcagaatttttagactttaaaaataattcatgttacaatttctaa |
14234361 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacat |
184 |
Q |
| |
|
||||||| ||||||||| | ||| |||||||| || |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
14234360 |
tcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatggaaatctactcagacat |
14234287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 50879337 - 50879459
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||||||||||| | ||||| ||| |||| |||||||||||||||||| | |||||||||||||| |||||||| |||||| |||||||| |||| |
|
|
| T |
50879337 |
atgaaaccggtatcgcattattccagttttcaccgtaaatattcatcgttgataatcagaattttcaagcttaaaaataattcccattacaattactaat |
50879436 |
T |
|
| Q |
112 |
catacaacttaacagagtatcat |
134 |
Q |
| |
|
|||||| |||||| || ||||| |
|
|
| T |
50879437 |
catacagtttaacatagcatcat |
50879459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 27079719 - 27079876
Alignment:
| Q |
22 |
tatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaaacatacaact |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||| ||||||||| |||| ||| ||||||||| |
|
|
| T |
27079719 |
tatcactttatttcagctttatttgtaaatatttattgttaaaaatcagaattttcagacttaaaaaataattcctgt----atttttaatcatacaact |
27079814 |
T |
|
| Q |
121 |
taacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagac |
182 |
Q |
| |
|
||||| | ||| || | || ||||| ||| |||||||| || ||| ||||||||| |||| |
|
|
| T |
27079815 |
taacataatataattgatataacgttaatcatattccggattcgataaaaatctactcagac |
27079876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 34657950 - 34657669
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
34657950 |
atgaaatcggtatcactttatttcaactttcgctgtaaatattaatcgttaaaaatcagaattttcaaacttaaaaacaattccaattacaatttctaaa |
34657851 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttatg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
34657850 |
catacaacttaacagagtattatcggtacgacgttcgtcacattccggactctataaaaatctactcagacatggtaattataataaacacacaat--ct |
34657753 |
T |
|
| Q |
212 |
cataacattcatcatcattgaaacagagaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatggatacttt |
295 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34657752 |
cgtaacattcatcatcattgaaacagagaaattaaaagaacaaaatgaatgagcagaaactaacctgttaatgatgggtacttt |
34657669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 19184199 - 19184015
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
19184199 |
atgaaaccggtgtcactttatttcaactttcgctgtaaatattaattgttaaaaatcagaattttcagacttaaaaacaatttctgttacagtttctaat |
19184100 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataa |
198 |
Q |
| |
|
||||||||||||||||| | ||| |||||||| || ||||||||||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
19184099 |
catacaacttaacagagcaccattggtacgacattcatcacattccggactc--tggaaatctactcggacatggtaattataataa |
19184015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 20933486 - 20933650
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||| | ||||||| |||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
20933486 |
atgaaaccggtatcattgtatttcaactttaattgtaaatgttaattgtttaaaatcagaatttttagactttaaaaataattcctgttataatttctaa |
20933585 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatcta |
175 |
Q |
| |
|
||||||| ||||||||| | ||| |||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
20933586 |
tcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatggaaatcta |
20933650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 31233115 - 31233042
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaa |
85 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
31233115 |
atgaaacctatatcactttatttcagctttcgccgtaaatatttatccttaaaaatcagaatttccagacttaa |
31233042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 38395 - 38571
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38395 |
atgaaaccggtatcactttatttcaactttcaccgtaaatattaatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
38494 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggta |
188 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38495 |
catacaacttaacagagtatcattggtacgacgttcatcatattccggactctatagaaatctactcagacatggta |
38571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 12423 - 12237
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
12423 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcattgttaaaaatcagaattttcagacttaaatacaattcctgttacaatttataat |
12324 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataa |
198 |
Q |
| |
|
||||||| ||||||||||| || |||||||| || ||||||||||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
12323 |
catacaatttaacagagtactattggtacgacattcatcacattccggaccctatggaaatctactcagacatggtaattataataa |
12237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 76250 - 76436
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
76250 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttgcaatttataat |
76349 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataa |
198 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||| || ||| ||||| ||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
76350 |
catacaatttaacagagtaccattggtacgacattcatcatattccagaccctatggaaatctactcagacatggtaattataataa |
76436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 87975 - 88161
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
87975 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaaccagaattttcagacttaaaaacaattcctgttacaatttataat |
88074 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataa |
198 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||| || ||||||||| ||| |||| |||||||||| | |||||||||||||||||| |
|
|
| T |
88075 |
catacaatttaacagagtaccattggtacgacattcatcacattccagaccctatggaaatctactcacacatggtaattataataa |
88161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 33083 - 32838
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||| || || ||| |||| ||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
33083 |
atgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaaaccagaatttttagactttaaaaataattcctgttacaatttctaa |
32984 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttat |
210 |
Q |
| |
|
||||||| ||||||||| | ||| ||||| || || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32983 |
tcatacaaattaacagagcaccattggtacaacattcatcacattccggactctataaaaatctactcagacatggtaattataataaacacacttttat |
32884 |
T |
|
| Q |
211 |
gcataacattcatcatcattgaaacagagaaattaaaagaacaaaa |
256 |
Q |
| |
|
|||| |||| ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
32883 |
tcatatcatttatcatcattgaaacagagagattgaaagaacaaaa |
32838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 7960391 - 7960215
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
7960391 |
atgaaaccggtatcgctttatttcaactttcgctgtaaatattaatcgttaaaaatcagaattttcagacttaaaaacaatttctgttaaaatttctaaa |
7960292 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggta |
188 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| || |||| |||||||||| |
|
|
| T |
7960291 |
catacaacttaacagagtatcattggtacgacgttcatcatattccggactctatagagatatactcagacatggta |
7960215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 11176996 - 11177168
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11176996 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttataat |
11177095 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacat |
184 |
Q |
| |
|
||||||| ||||||||| | ||| |||||||| || |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
11177096 |
catacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
11177168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 11296311 - 11296482
Alignment:
| Q |
13 |
tgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaac |
112 |
Q |
| |
|
||||||||||||| | ||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
11296311 |
tgaaaccggtatcgcgttatttcagttttcattgtacatattcatcgttaaaaatcaaaattttcagacttaaaaataattcatgttacaattagcaatg |
11296410 |
T |
|
| Q |
113 |
atacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacat |
184 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| | || ||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
11296411 |
atacaaattaacagagcatcattggtacggcattcatcatattccggactctataaaaatctactaagacat |
11296482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 3829506 - 3829694
Alignment:
| Q |
52 |
attcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaacatacaacttaacagagtatcatcggtacgacgtttgtca |
151 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| | ||||| | ||||| ||||||| |||||||||||||||| ||||| | || ||||| ||| |
|
|
| T |
3829506 |
attcatcgttaaaaataa-aattttcagacttaaatataattcattttacagtttctaatcatacaacttaacagaaaatcattgatagaacgttcatca |
3829604 |
T |
|
| Q |
152 |
cattccggactctatagaaatctactta-gacatggtaattataataaacacacttttatgcataacattcatcatcattgaaacagagaa |
241 |
Q |
| |
|
||||| |||||||| || |||||| | |||||||||||||||||||| | |||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
3829605 |
tattcca-actctataaaattctactcaagacatggtaattataataaataaacttttattcataccattcatcatcattgaaacaaagaa |
3829694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 3791666 - 3791892
Alignment:
| Q |
23 |
atcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaacatacaactta |
122 |
Q |
| |
|
||||| ||||| ||| |||| | || || |||||||||||||||| | |||||||||||||||| | ||||| | ||||| ||||||| ||||||||| | |
|
|
| T |
3791666 |
atcacattattccagttttcactgttaaaattcatcgttaaaaataa-aattttcagacttaaatataattcattttacattttctaatcatacaactca |
3791764 |
T |
|
| Q |
123 |
acagagtatcatcggta-------cgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttatgcata |
215 |
Q |
| |
|
||| | |||||| | || ||||||| ||| ||||| | |||||| |||| |||| |||||| |||||||||||||| | |||||||| |||| |
|
|
| T |
3791765 |
acaaaatatcattgataggaccgacgacgttcatcatattccaaattctataaaaatttactcagacatagtaattataataaataaacttttattcata |
3791864 |
T |
|
| Q |
216 |
acattcatcatcattgaaacagagaaat |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3791865 |
ccattcatcatcattgaaacagagaaat |
3791892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 23047436 - 23047343
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatt |
105 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||| ||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
23047436 |
atgaaaccggtatcgcattatttcaactttcgctgtaaatatttgtatttaaaaatcagaattttcagatttaaaaataattccggttacaatt |
23047343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 3779530 - 3779468
Alignment:
| Q |
179 |
agacatggtaattataataaacacacttttatgcataacattcatcatcattgaaacagagaa |
241 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
3779530 |
agacatagtaattataataaatagacttttattcatcccattgatcatcattgaaacagagaa |
3779468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 23047330 - 23047280
Alignment:
| Q |
141 |
gacgtttgtcacattccggactctatagaaatctacttagacatggtaatt |
191 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||| | ||||||||||| |
|
|
| T |
23047330 |
gacgttcgtcacattccggactctataaaaatgtactcaaacatggtaatt |
23047280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 18477108 - 18477382
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
18477108 |
atgaaaccgatatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagactttaaaaataattcctgttacaatttctaa |
18477207 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttat |
210 |
Q |
| |
|
||||||| ||||||||| | ||| |||||||| || |||||||||||||||||| ||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
18477208 |
tcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacatggtatatataataaatacacttttat |
18477307 |
T |
|
| Q |
211 |
gcataacattcatcatcattgaaacagagaaa-ttaaaagaacaaaatg----aatgagcagaaactaacctgtt |
280 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
18477308 |
tcatatcattcatcatcattgaaatagagaaaattaaaagaacaaaatgaatgaatgagcataaactaacctgtt |
18477382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 18487204 - 18487478
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
18487204 |
atgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagactttaaaaataattcctgttacaatttctaa |
18487303 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttat |
210 |
Q |
| |
|
||||||| ||||||||| | | | |||||||| || |||||||||||||||||| ||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
18487304 |
tcatacaaattaacagagcaccgttggtacgacattcatcacattccggactctatgaaaatctactcagacatggtatatataataaatacacttttat |
18487403 |
T |
|
| Q |
211 |
gcataacattcatcatcattgaaacagagaaa-ttaaaagaacaaaatg----aatgagcagaaactaacctgtt |
280 |
Q |
| |
|
| || |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
18487404 |
tcgtatcattcatcatcattgaaacagagaaaattaaaagaacaaaatgaatgaatgagcataaactaacctgtt |
18487478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 7588499 - 7588658
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||||| ||||| | ||||| ||||||||||| |||||||||||||||||||||||||| | |||| |||||||| ||||| |||||||||| ||| |
|
|
| T |
7588499 |
atgaaaccagtatcgcgttattccagctttcgccctaaatattcatcgttaaaaatcagaagtatcaggcttaaaaataattctagttacaatttataat |
7588598 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaat |
172 |
Q |
| |
|
||||||| |||||| |||| ||| ||||||| ||| ||| ||||||||||||||| |||| |
|
|
| T |
7588599 |
catacaatttaaca-agtaccattggtacgaggttcatcatattccggactctataaaaat |
7588658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 87253 - 87538
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt----aaaaacaattcctgttacaatttc |
107 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||| || || ||| |||||||||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
87253 |
atgaaaccggtatcactgtatttcaactttcattgtaaaggttaattgtttaaaatcagaatttttggactttaaaaaaaataattcctgttacaatttc |
87352 |
T |
|
| Q |
108 |
taaacatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttt |
207 |
Q |
| |
|
||| |||||| ||||||||| | ||| |||||||| || ||||||| || ||||||| ||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
87353 |
taattatacaaattaacagagcaccattggtacgacattcatcacatttcgaactctatgaaaatctactcagacatggtatatataataaatacacttt |
87452 |
T |
|
| Q |
208 |
tatgcataacattcatcatcattgaaacagagaaa-ttaaaagaacaa----aatgaatgagcagaaactaacctgttaatgatgg |
288 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
87453 |
tattcataacattcatcatcattgaaacagagaaatttaaaagaacaaaatgaatgaatgagcagaaactaacctgttgatgatgg |
87538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 96947 - 97232
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt----aaaaacaattcctgttacaatttc |
107 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||| || || ||| |||||||||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
96947 |
atgaaaccggtatcactgtatttcaactttcattgtaaaggttaattgtttaaaatcagaatttttggactttaaaaaaaataattcctgttacaatttc |
97046 |
T |
|
| Q |
108 |
taaacatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttt |
207 |
Q |
| |
|
||| |||||| ||||||||| | ||| |||||||| || ||||||| || ||||||| ||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
97047 |
taattatacaaattaacagagcaccattggtacgacattcatcacatttcgaactctatgaaaatctactcagacatggtatatataataaatacacttt |
97146 |
T |
|
| Q |
208 |
tatgcataacattcatcatcattgaaacagagaaa-ttaaaagaacaa----aatgaatgagcagaaactaacctgttaatgatgg |
288 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
97147 |
tattcataacattcatcatcattgaaacagagaaatttaaaagaacaaaatgaatgaatgagcagaaactaacctgttgatgatgg |
97232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 17065 - 16910
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaa |
111 |
Q |
| |
|
|||||| || |||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||||||||||| || |
|
|
| T |
17065 |
atgaaatcgatatcactttattccagctttcgccgtaaatattcatcttttaaaatcagaattttcaaacttaaaaccaattcctgttacaatttaaaat |
16966 |
T |
|
| Q |
112 |
catacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctata |
167 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
16965 |
catacaatttaacagagtaccattggtacgacgttcatcacattccggactctata |
16910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 187008 - 186757
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| || ||| |||||||||||||| ||| || ||||| ||||||||||||||||||||| |
|
|
| T |
187008 |
atgaaaccggtatcactttatttcaactttcattgtaaatattaattgtttaaaatcagaatttttagagtttaaaaataattcctgttacaatttctaa |
186909 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttat |
210 |
Q |
| |
|
||||||| ||||||||| | ||| ||||| || || |||||||||||||||||| |||||||||| |||||||||| ||||||||| | || | | |
|
|
| T |
186908 |
tcatacaaattaacagagcaccattggtacaacattcatcacattccggactctatggaaatctactcagacatggtatatataataaataaacaaatgt |
186809 |
T |
|
| Q |
211 |
gcataacattcatcatcattgaaacagagaaattaaaagaacaaaatgaatga |
263 |
Q |
| |
|
||| |||| |||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
186808 |
tcatgctattcgtcattattgaaacagtg-aattaaaagaacaaaatgaatga |
186757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 5199 - 5386
Alignment:
| Q |
52 |
attcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttctaaacatacaacttaacagagtatcatcggtacgacgtttgtca |
151 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||| | ||||| | ||||| ||||||| |||||||||||||||| |||||| | || ||||| ||| |
|
|
| T |
5199 |
attcatcgttaaaaataaaa--tttcagacttaaatataattcattttacagtttctaatcatacaacttaacagaatatcattgatagaacgttcatca |
5296 |
T |
|
| Q |
152 |
cattccggactctatagaaatctacttagacatggtaattataataaacacacttttatgcataacattcatcatcattgaaacagagaa |
241 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
5297 |
tattccaaactctataaaaatctactcagacatggtaattataataaataaacttttattcataccattcatcatcattgaaacagagaa |
5386 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 749 - 922
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaac-aattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
749 |
atgaaaccgatatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagacttaaaaaataattcctgttacaatttctaa |
848 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacat |
184 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||| || |||| ||||||||| ||| ||||||||| |||||| |
|
|
| T |
849 |
tcatacaaattaacagagcatcattggtacgacattcatcacgttccggactttatgaaaatctactcagacat |
922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 19901017 - 19901189
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
19901017 |
atgaaaccggtatcactgtatttcaacttttattgtaaatgttaattgtttaaaatcagaatttttagactttaaaaataattcctgttacaatttctaa |
19901116 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacat |
184 |
Q |
| |
|
||||||| ||||||||| | ||| |||||||| || |||||||||||||||||| | |||||||| |||||| |
|
|
| T |
19901117 |
tcatacaaattaacagagcaccattggtacgacattcatcacattccggactctat-ggaatctactcagacat |
19901189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 18294310 - 18294417
Alignment:
| Q |
70 |
gaattttcagacttaaaaacaattcctgttacaatttctaaacatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctataga |
169 |
Q |
| |
|
||||||| |||||| |||| ||||| ||||||||||||||| |||||||||||||| ||| ||| |||||||| | ||||||||| ||||||||| | |
|
|
| T |
18294310 |
gaatttttagacttcaaaataattcatgttacaatttctaatcatacaacttaacaatgtaccattggtacgacaatcatcacattccagactctataaa |
18294409 |
T |
|
| Q |
170 |
aatctact |
177 |
Q |
| |
|
|||||||| |
|
|
| T |
18294410 |
aatctact |
18294417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 35870 - 36058
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| || ||| |||||||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
35870 |
atgaaaccggtatcactttatttcaactttgattgtaaatattaattgtttaaaatcagaatttttagactttaaaaataattcctgttacaatttctaa |
35969 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaa |
199 |
Q |
| |
|
||| || ||||||||| | ||| |||| || || |||||||||||||||||| |||||||||| || ||||| | ||||||||| |
|
|
| T |
35970 |
tcatgtaaattaacagagcaccattagtacaacattcatcacattccggactctatggaaatctactcaggcatgggatatataataaa |
36058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 28148 - 28399
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt-aaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || || ||| | ||| ||||| ||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
28148 |
atgaaaccggtatcactttatttcaactttcattgttaacattatttgtttaaaatttgaatttttagactttaaaaataattcctgttacaatttctaa |
28247 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacatggtaattataataaacacacttttat |
210 |
Q |
| |
|
||||||| |||| |||| | ||| ||||| || | ||||||||| |||||||| ||||||||| |||||||| | ||||||||| | || | | |
|
|
| T |
28248 |
tcatacaaattaatagagcaccattggtacaacagtcatcacattccagactctatgaaaatctactcagacatgggatatataataaataaacaaatgt |
28347 |
T |
|
| Q |
211 |
gcataacattcatcatcattgaaacagagaaattaaaagaacaaaatgaatga |
263 |
Q |
| |
|
||| |||| |||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
28348 |
tcatgctattcgtcattattgaaacag-ggaattaaaagaacaaaatgaatga |
28399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 4453 - 4287
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagac-ttaaaaacaattcctgttacaatttctaa |
110 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
4453 |
atgaaacctttatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagaccttaaaaataattcctgttacaatttctag |
4354 |
T |
|
| Q |
111 |
acatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctact |
177 |
Q |
| |
|
||||||| ||||||||| ||||| ||||| || || ||||||||||||||||||| ||||||||| |
|
|
| T |
4353 |
tcatacaaattaacagagcatcattggtacaacattcatcacattccggactctataaaaatctact |
4287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 23689542 - 23689446
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgttacaatttct |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23689542 |
atgaaaccggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaaaataattcatgttacaatttct |
23689446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 28386920 - 28386745
Alignment:
| Q |
12 |
atgaaaccggtatcactttatttcagctttcgccgtaaatattcatcg-ttaaaaatcagaattttcagactt--aaaaacaattcctgttacaatttct |
108 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||| || || || |||||||||||||| |||||| ||||| | ||||||||||||||||| |
|
|
| T |
28386920 |
atgaaaccggtatcactctatttcaactttcattgtaaatgttaattaatttaaaatcagaatttttagacttttaaaaatatttcctgttacaatttct |
28386821 |
T |
|
| Q |
109 |
aaacatacaacttaacagagtatcatcggtacgacgtttgtcacattccggactctatagaaatctacttagacat |
184 |
Q |
| |
|
|| ||||||| ||||||| | ||||| ||| |||| || ||| ||||||||||| || |||||||||| |||||| |
|
|
| T |
28386820 |
aatcatacaaattaacagggcatcattggtgcgacattcatcatattccggactcaatggaaatctactcagacat |
28386745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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