View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2922_high_12 (Length: 311)
Name: NF2922_high_12
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 42530124 - 42530418
Alignment:
| Q |
19 |
tgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttg |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42530124 |
tgaagatcaatcgaaggaaaccaatgcggtaggttccatcaatgtgagcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttg |
42530223 |
T |
|
| Q |
119 |
gagtgcattgattcatctcaaataatgtcagtt------ccagaggctttggagggtatagcaatcctcta--------ttatgatgaagaccggaacac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||| ||||||||||||||||||| | |
|
|
| T |
42530224 |
gagtgcattgattcatctcaaataatgtcagttccagtcccagaggctttggagggtataaccaccctctattatgaatttatgatgaagaccggaacgc |
42530323 |
T |
|
| Q |
205 |
gatttatacgggtgacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttcatctca |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
42530324 |
gatttatacgggtaacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggaataggttttattgtttcttctca |
42530418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 42535840 - 42536120
Alignment:
| Q |
19 |
tgaagatcaatcgaagaaaaccaatgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttg |
118 |
Q |
| |
|
|||||||||||||| | ||||||| | ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42535840 |
tgaagatcaatcgatggttaccaatgtgataggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttg |
42535939 |
T |
|
| Q |
119 |
gagtgcattgattcatctcaaataatgtcagttccagaggctttggagggtatagcaatcctctattatgatgaagaccggaacacgatttatacgggtg |
218 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42535940 |
gagtgcattgattcatctaaaaaaatgtcagttacagaggctttggagggtataaccaccctctattatgatgaagaccggaacgcgatttatacgggta |
42536039 |
T |
|
| Q |
219 |
acagacatggtcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttcatctca |
299 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
42536040 |
acagacatggtcatgttcatgtctggtccaactccaaccaactaatgataaaaaaggaataggttttattgtttcttctca |
42536120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
50 |
ggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaa |
111 |
Q |
| |
|
||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 27826179 - 27826252
Alignment:
| Q |
178 |
cctctattatgatgaagaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaact |
251 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||| ||| | ||||||||| |||||||||| |||||||||| |
|
|
| T |
27826179 |
cctcttttatgatgaagaccggaacgagatctatactggtaatagacatggttttgttcatgtatggtccaact |
27826252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University