View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_high_17 (Length: 258)
Name: NF2922_high_17
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 39827872 - 39828118
Alignment:
| Q |
1 |
taattgtttttcgcagttctttcgggacaatttccatcgggataaatagcgctgctggnnnnnnnnnctcaaacatcatatcaaattgttgggccgtgag |
100 |
Q |
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| T |
39827872 |
taattgtttttcgcagtcctttcgagacaatttccatcgggataaatagcactgctggaaaaaaaa-ctcaaacatcatatcaaattgttggattgtgag |
39827970 |
T |
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| Q |
101 |
gggaatctgaaggatcacccacattaggtaagaacaatcacataagtgagagagacgccagattttttacttaaaatcttaagacattaggtttatgcat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
39827971 |
gggagtctgaaggatcacccacattaggtaagaataattacataactgagagagacgccagactttttacttaaaatcttaagatattaaatttatgcat |
39828070 |
T |
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| Q |
201 |
catctcacttataaaatattcaaaatcttgtatgtgagaggatggatg |
248 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39828071 |
catctaacttataaaatattcaaaatcttgtatgtgagaggatggatg |
39828118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 2891883 - 2891932
Alignment:
| Q |
173 |
aaaatcttaagacattaggtttatgcatcatctcacttataaaatattca |
222 |
Q |
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|||| |||||||||||||||||||| ||| ||| ||||||||| |||||| |
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| T |
2891883 |
aaaaccttaagacattaggtttatggatcctcttacttataaagtattca |
2891932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 39003676 - 39003586
Alignment:
| Q |
132 |
gaacaatcacataagtgagagagacgccagattttttacttaaaatcttaagacattaggtttatgcatcatctcacttataaaatattcaa |
223 |
Q |
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| T |
39003676 |
gaacaatcatataagtgagagaaacaccacatttta-actcaaaatcttaagacattaggttattgggtcatctcacttatataatgttcaa |
39003586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 18091176 - 18091085
Alignment:
| Q |
132 |
gaacaatcacataagtgagagagacgccagattttttacttaaaatcttaagacattaggtttatgcatcatctcacttataaaatattcaa |
223 |
Q |
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||||||||| |||||||||||| || ||| ||||| | |||| ||||||| ||||||||||| ||||||||| |||||||||||||| |
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| T |
18091176 |
gaacaatcatataagtgagagaaacaccacattttaatataaaaaccttaagatattaggtttataggtcatctcacatataaaatattcaa |
18091085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 9217695 - 9217647
Alignment:
| Q |
165 |
ttttacttaaaatcttaagacattaggtttatgcatcatctcacttata |
213 |
Q |
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| T |
9217695 |
ttttactcaaaatcttaagacattagatttatggatcatctcacgtata |
9217647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 11400751 - 11400661
Alignment:
| Q |
132 |
gaacaatcacataagtgagagagacgccagattttttacttaaaatcttaagacattaggtttatgcatcatctcacttataaaatattcaa |
223 |
Q |
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||||||||| |||||||||||||| ||| | ||| ||| |||| |||||||||||| |||||| |||||||||||||||||| ||||| |
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| T |
11400751 |
gaacaatcatataagtgagagagatgccgcacttta-actcaaaaccttaagacattaagtttatatgtcatctcacttataaaatgttcaa |
11400661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 12421716 - 12421773
Alignment:
| Q |
166 |
tttacttaaaatcttaagacattaggtttatgcatcatctcacttataaaatattcaa |
223 |
Q |
| |
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|||| |||||||||||| | ||| ||||||| ||||||||| ||||||||||||||| |
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| T |
12421716 |
tttatttaaaatcttaaaatattgagtttatgaatcatctcagttataaaatattcaa |
12421773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 8904608 - 8904539
Alignment:
| Q |
87 |
tgttgggccgtgaggggaatctgaaggatcacccacattaggtaagaacaatcacataagtgagagagac |
156 |
Q |
| |
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||||||| || ||||||| ||||| ||| || |||||||||| |||| |||| |||||||||||||||| |
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| T |
8904608 |
tgttgggtcgcgaggggagtctgagggaccatccacattaggcaagagcaatagcataagtgagagagac |
8904539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 34430725 - 34430761
Alignment:
| Q |
21 |
ttcgggacaatttccatcgggataaatagcgctgctg |
57 |
Q |
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| T |
34430725 |
ttcgggacaatttccgtcgggataaatagcactgctg |
34430761 |
T |
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