View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2922_high_19 (Length: 251)

Name: NF2922_high_19
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2922_high_19
NF2922_high_19
[»] chr8 (4 HSPs)
chr8 (1-251)||(13528822-13529073)
chr8 (1-251)||(13618361-13618612)
chr8 (26-121)||(28075625-28075720)
chr8 (211-248)||(4187651-4187688)
[»] chr4 (5 HSPs)
chr4 (19-133)||(25367678-25367792)
chr4 (48-130)||(17331483-17331565)
chr4 (47-120)||(7023034-7023108)
chr4 (19-133)||(24912128-24912242)
chr4 (76-121)||(27303962-27304007)
[»] chr2 (4 HSPs)
chr2 (16-130)||(14962548-14962662)
chr2 (24-85)||(30705573-30705634)
chr2 (48-88)||(19004585-19004625)
chr2 (68-120)||(23854055-23854107)
[»] chr5 (4 HSPs)
chr5 (20-106)||(24512740-24512826)
chr5 (25-114)||(12563969-12564058)
chr5 (24-114)||(24847357-24847447)
chr5 (26-83)||(15339622-15339679)
[»] chr7 (8 HSPs)
chr7 (26-114)||(11466918-11467006)
chr7 (38-121)||(3401044-3401128)
chr7 (74-130)||(12357708-12357764)
chr7 (48-123)||(2352141-2352216)
chr7 (19-122)||(10053749-10053852)
chr7 (76-122)||(7152128-7152174)
chr7 (24-130)||(19138776-19138882)
chr7 (24-130)||(20738175-20738281)
[»] chr1 (6 HSPs)
chr1 (1-109)||(31318422-31318530)
chr1 (19-129)||(15415872-15415982)
chr1 (36-123)||(23420483-23420570)
chr1 (90-130)||(20451201-20451241)
chr1 (90-130)||(20537839-20537879)
chr1 (90-130)||(20543700-20543740)
[»] chr3 (2 HSPs)
chr3 (19-130)||(25782020-25782131)
chr3 (39-119)||(8839638-8839717)
[»] chr6 (3 HSPs)
chr6 (68-114)||(17320781-17320827)
chr6 (68-114)||(11076970-11077016)
chr6 (90-130)||(21819932-21819972)
[»] scaffold0006 (2 HSPs)
scaffold0006 (27-130)||(78563-78665)
scaffold0006 (90-130)||(234102-234142)
[»] scaffold0783 (1 HSPs)
scaffold0783 (27-121)||(4436-4529)
[»] scaffold0171 (1 HSPs)
scaffold0171 (76-121)||(7366-7411)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 13529073 - 13528822
Alignment:
Q  1 ttctctttaatttgcttcataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattac 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||  |||||||||     
T  13529073 ttctctttaatttgcttcataaacaaataaattatgttaactgcttcgttgaatgacaatccatatggagacgataacttactactttattacttattat 13528974  T
Q  101 gatttggtgcacttatcaattcgcccatcagttagccttatcaataatccctaatttcaatattttacttggtatattctcttt-aaatgtttaactgtc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  13528973 gatttggtgcacttatcaattcgcccatcagttagccttatcaataatccctaatttcaatattttacttggtatattccctttaaaatgtttaactgtc 13528874  T
Q  200 ctaaatgtttaaaatgtttttcaacctaagattctaccacaaaatcacttca 251  Q
    |||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  13528873 ctaaatatttaaaatatttttcaacccaagattctaccacaaaatcacttca 13528822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 13618612 - 13618361
Alignment:
Q  1 ttctctttaatttgcttcataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattac 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||  |||||||||     
T  13618612 ttctctttaatttgcttcataaacaaataaattatgttaactgcttcgttgaatgacaatccatatggagacgataacttactactttattacttattat 13618513  T
Q  101 gatttggtgcacttatcaattcgcccatcagttagccttatcaataatccctaatttcaatattttacttggtatattctcttt-aaatgtttaactgtc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  13618512 gatttggtgcacttatcaattcgcccatcagttagccttatcaataatccctaatttcaatattttacttggtatattccctttaaaatgtttaactgtc 13618413  T
Q  200 ctaaatgtttaaaatgtttttcaacctaagattctaccacaaaatcacttca 251  Q
    |||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  13618412 ctaaatatttaaaatatttttcaacccaagattctaccacaaaatcacttca 13618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 28075625 - 28075720
Alignment:
Q  26 aataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatcaatt 121  Q
    |||||||| || ||||||||  ||||||| ||||| ||| ||   ||||||||||||||||||  ||||| |||| |||||||| |||| ||||||    
T  28075625 aataaattctgctaattgctaagttgaataacaatccatgtaagaacaataacttactactttattacttgttacaatttggtgtacttgtcaatt 28075720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 4187651 - 4187688
Alignment:
Q  211 aaatgtttttcaacctaagattctaccacaaaatcact 248  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  4187651 aaatgtttttcaacccaagattctaccacgaaatcact 4187688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 25367678 - 25367792
Alignment:
Q  19 ataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatca 118  Q
    ||||||||||||||| |||||||| ||  |||||| |||||||||| | |||||  ||||||||||||||  ||||| || ||||||||||||||| |||    
T  25367678 ataaacaaataaattttgttaatttctaagttgaacgacaattcatgtggagactgtaacttactactttattacttgtttcgatttggtgcacttgtca 25367777  T
Q  119 attcgcccatcagtt 133  Q
    ||||| |||||||||    
T  25367778 attcgtccatcagtt 25367792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 17331565 - 17331483
Alignment:
Q  48 gttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatcaattcgcccatca 130  Q
    |||||| |||||| | ||| ||||| |||||||||||||||  |||||| ||||||||||||||||| |||||| | ||||||    
T  17331565 gttgaacgacaatccctatggagactataacttactactttattacttactacgatttggtgcacttttcaatttgtccatca 17331483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 7023108 - 7023034
Alignment:
Q  47 cgttgaatgacaattcatatagagacaataa-cttactacttttatacttattacgatttggtgcacttatcaat 120  Q
    |||||||||||||| | | | |||||||||| |||||||||||  || || ||||||||||||||||||||||||    
T  7023108 cgttgaatgacaatacttgtggagacaataaacttactactttattatttgttacgatttggtgcacttatcaat 7023034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 24912242 - 24912128
Alignment:
Q  19 ataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatca 118  Q
    |||||||||||||||  ||||||||||   || || ||||||| || | ||||  ||||||| |||||||  ||||| || | ||||||||||||| |||    
T  24912242 ataaacaaataaatttcgttaattgctaatttaaacgacaatttatgtggagatgataacttgctactttattacttgtttcaatttggtgcacttgtca 24912143  T
Q  119 attcgcccatcagtt 133  Q
    ||||| | |||||||    
T  24912142 attcgtcaatcagtt 24912128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 27303962 - 27304007
Alignment:
Q  76 aacttactacttttatacttattacgatttggtgcacttatcaatt 121  Q
    |||||||||||||  |||||||||||||||||| |||||| |||||    
T  27303962 aacttactactttattacttattacgatttggtacacttaccaatt 27304007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 14962662 - 14962548
Alignment:
Q  16 ttcataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcactta 115  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||| |  | ||||||||||||||||||  |||||  | | |||| ||||| ||     
T  14962662 ttcataaacaaataaattatgttaattgctaagttgaacgacaattcatgtgaaaacaataacttactactttattacttgcttcaatttagtgcatttg 14962563  T
Q  116 tcaattcgcccatca 130  Q
    |||||||| ||||||    
T  14962562 tcaattcgtccatca 14962548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 30705573 - 30705634
Alignment:
Q  24 caaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactac 85  Q
    ||||||||||||||||||||||| ||||||| ||||  |  || |||| |||||||||||||    
T  30705573 caaataaattatgttaattgcttagttgaatcacaaaccccatggagataataacttactac 30705634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 19004625 - 19004585
Alignment:
Q  48 gttgaatgacaattcatatagagacaataacttactacttt 88  Q
    |||||| |||||| ||||||||||| |||||||||||||||    
T  19004625 gttgaacgacaatccatatagagacgataacttactacttt 19004585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 23854107 - 23854055
Alignment:
Q  68 gagacaataacttactacttttatacttattacgatttggtgcacttatcaat 120  Q
    |||||||||| ||||||||||  ||||| ||| |||||||||||||| |||||    
T  23854107 gagacaataatttactactttattacttgttatgatttggtgcacttgtcaat 23854055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 24512740 - 24512826
Alignment:
Q  20 taaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttg 106  Q
    ||||||||||||||   |||||||||| |||||| ||||||   |||| |||| ||||||||||||||| |||||||||||||||||    
T  24512740 taaacaaataaattcaattaattgcttagttgaacgacaatctctatatagacgataacttactactttaatacttattacgatttg 24512826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 12564058 - 12563969
Alignment:
Q  25 aaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcactt 114  Q
    ||||||||| |||||||||||  |||||| |||||||||| ||||||| |||||||| ||||||  || || ||| ||||||||||||||    
T  12564058 aaataaattttgttaattgctaagttgaacgacaattcatgtagagacgataacttattactttattatttgttatgatttggtgcactt 12563969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 24847357 - 24847447
Alignment:
Q  24 caaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcactt 114  Q
    ||||||||||  |||||||||||||||||| || ||||| | || |||| ||||||||||| |||  ||||| || |||||| ||||||||    
T  24847357 caaataaattccgttaattgcttcgttgaacgagaattcttgtaaagacgataacttactaatttattacttgtttcgattttgtgcactt 24847447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 15339622 - 15339679
Alignment:
Q  26 aataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttact 83  Q
    |||||||| |||||||| ||||||||||||||||||| | | ||||| ||||||||||    
T  15339622 aataaattttgttaatttcttcgttgaatgacaattcttgtggagacgataacttact 15339679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 11467006 - 11466918
Alignment:
Q  26 aataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcactt 114  Q
    |||||||| || ||||||||  ||||||||||||| ||| | ||||||||||| |||||||||  ||||| |||||||||| |||||||    
T  11467006 aataaattctgctaattgctaagttgaatgacaatccatgtggagacaataacctactactttattacttcttacgatttgatgcactt 11466918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 3401044 - 3401128
Alignment:
Q  38 taattgcttcgttgaatgacaattcatatagagacaat-aacttactacttttatacttattacgatttggtgcacttatcaatt 121  Q
    ||||||||  |||||| |||||||||||| ||||| || || ||||||||||  ||||| ||||||||| |||||||| ||||||    
T  3401044 taattgctaagttgaacgacaattcatatggagacgataaaattactactttattacttgttacgattttgtgcacttgtcaatt 3401128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 12357764 - 12357708
Alignment:
Q  74 ataacttactacttttatacttattacgatttggtgcacttatcaattcgcccatca 130  Q
    ||||||||||||||| |||||| ||||||| ||||||||||  ||||||| ||||||    
T  12357764 ataacttactactttaatacttgttacgatctggtgcacttgacaattcgtccatca 12357708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 2352216 - 2352141
Alignment:
Q  48 gttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatcaattcg 123  Q
    |||||| |||||| ||| | ||||  |||||||||||||||  ||||| |||||||||| ||||||| ||||||||    
T  2352216 gttgaacgacaatccatgtggagatgataacttactactttattacttgttacgatttgatgcacttgtcaattcg 2352141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 10053852 - 10053749
Alignment:
Q  19 ataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatca 118  Q
    ||||| |||||| || |||||||||||  |||||| |||||| | |||||| || ||||| |||||||||   | ||||| | ||||||||||||| |||    
T  10053852 ataaataaataatttttgttaattgctaagttgaacgacaatccctatagaaacgataacatactactttataatttatttcaatttggtgcacttgtca 10053753  T
Q  119 attc 122  Q
    ||||    
T  10053752 attc 10053749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 7152128 - 7152174
Alignment:
Q  76 aacttactacttttatacttattacgatttggtgcacttatcaattc 122  Q
    |||||||||||||  ||||| |||||||||||||||||| |||||||    
T  7152128 aacttactactttattacttgttacgatttggtgcacttgtcaattc 7152174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 19138882 - 19138776
Alignment:
Q  24 caaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatcaattcg 123  Q
    ||||||||||   ||||||||||| |||||  ||||| ||| | |||||||||| ||||||||||  ||||| || | ||| |||||| || ||||||||    
T  19138882 caaataaatttcattaattgcttcattgaacaacaatccatgtggagacaataatttactactttattacttgtttcaattaggtgcatttgtcaattcg 19138783  T
Q  124 cccatca 130  Q
     ||||||    
T  19138782 tccatca 19138776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 20738281 - 20738175
Alignment:
Q  24 caaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatcaattcg 123  Q
    ||||||||||   ||||||||||| |||||  ||||| ||| | |||||||||| ||||||||||  ||||| || | ||| |||||| || ||||||||    
T  20738281 caaataaatttcattaattgcttcattgaacaacaatccatgtggagacaataatttactactttattacttgtttcaattaggtgcatttgtcaattcg 20738182  T
Q  124 cccatca 130  Q
     ||||||    
T  20738181 tccatca 20738175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31318530 - 31318422
Alignment:
Q  1 ttctctttaatttgcttcataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattac 100  Q
    |||||||| | ||||||  ||| ||||||||||  |||||||||| ||||||| |||||  ||| | ||||| |||||||||||||||  |||||||||     
T  31318530 ttctcttttaattgctttctaatcaaataaatttcgttaattgctccgttgaacgacaaaccatgtggagacgataacttactactttattacttattat 31318431  T
Q  101 gatttggtg 109  Q
     ||||||||    
T  31318430 aatttggtg 31318422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 15415982 - 15415872
Alignment:
Q  19 ataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatca 118  Q
    ||||||||||||||| |||||||||||  |||||| ||||||   ||| ||||| ||||||||||  |||  ||||| |||||| ||| | ||||| |||    
T  15415982 ataaacaaataaattttgttaattgctaagttgaacgacaatctctatggagacgataacttactgttttattacttgttacgacttgatacacttgtca 15415883  T
Q  119 attcgcccatc 129  Q
    ||||| |||||    
T  15415882 attcgtccatc 15415872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 23420570 - 23420483
Alignment:
Q  36 gttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatcaattcg 123  Q
    ||||||||||  |||||| |||||| | | | ||||| |||||||||||||||  ||||| |||||||||||| |||||  |||||||    
T  23420570 gttaattgctaagttgaacgacaatccttgtggagacgataacttactactttattacttgttacgatttggtacacttgccaattcg 23420483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 20451201 - 20451241
Alignment:
Q  90 atacttattacgatttggtgcacttatcaattcgcccatca 130  Q
    |||||| ||||||||| ||||||||||||||||| ||||||    
T  20451201 atacttgttacgatttagtgcacttatcaattcgtccatca 20451241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 20537839 - 20537879
Alignment:
Q  90 atacttattacgatttggtgcacttatcaattcgcccatca 130  Q
    |||||| ||||||||| ||||||||||||||||| ||||||    
T  20537839 atacttgttacgatttagtgcacttatcaattcgtccatca 20537879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 20543700 - 20543740
Alignment:
Q  90 atacttattacgatttggtgcacttatcaattcgcccatca 130  Q
    |||||| ||||||||| ||||||||||||||||| ||||||    
T  20543700 atacttgttacgatttagtgcacttatcaattcgtccatca 20543740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 25782131 - 25782020
Alignment:
Q  19 ataaacaaataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatca 118  Q
    ||||||||||||||| |||||| |||| ||||||| |||||| ||| || | ||  ||||||||||||||  ||| | || |||||||||||| ||  ||    
T  25782131 ataaacaaataaattctgttaaatgctacgttgaaagacaatccatgtaaatacgttaacttactactttattacatctttcgatttggtgcattttcca 25782032  T
Q  119 attcgcccatca 130  Q
    |||| |||||||    
T  25782031 attcacccatca 25782020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 8839638 - 8839717
Alignment:
Q  39 aattgcttcgttgaatgacaattcatatagagacaataacttactacttttatacttattacgatttggtgcacttatcaa 119  Q
    ||||||||||||||  ||||||  || ||||||| |||||||||||||||  ||||||||||| |||| ||||||| ||||    
T  8839638 aattgcttcgttgac-gacaatcaatgtagagacgataacttactactttattacttattacgttttgatgcacttgtcaa 8839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 17320781 - 17320827
Alignment:
Q  68 gagacaataacttactacttttatacttattacgatttggtgcactt 114  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  17320781 gagacaataactaactactttattacttattacgatttggtgcactt 17320827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 11076970 - 11077016
Alignment:
Q  68 gagacaataacttactacttttatacttattacgatttggtgcactt 114  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||    
T  11076970 gagacaataacttactacttttttacttgttacagtttggtgcactt 11077016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 21819972 - 21819932
Alignment:
Q  90 atacttattacgatttggtgcacttatcaattcgcccatca 130  Q
    |||||| ||||||||| ||||||||||||||||| ||||||    
T  21819972 atacttgttacgatttagtgcacttatcaattcgtccatca 21819932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 78665 - 78563
Alignment:
Q  27 ataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactactttta-tacttattacgatttggtgcacttatcaattcgcc 125  Q
    ||||||||| |||||||||| |||||  |||||||||| || |||  |||| ||||  |||||| ||||| |||||||||||||||||| |||||| | |    
T  78665 ataaattattttaattgcttagttgagcgacaattcatgtaaagaagataatttac--cttttactacttgttacgatttggtgcacttgtcaatttgtc 78568  T
Q  126 catca 130  Q
    |||||    
T  78567 catca 78563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 234142 - 234102
Alignment:
Q  90 atacttattacgatttggtgcacttatcaattcgcccatca 130  Q
    |||||| ||||||||| ||||||||||||||||| ||||||    
T  234142 atacttgttacgatttagtgcacttatcaattcgtccatca 234102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 4529 - 4436
Alignment:
Q  27 ataaattatgttaattgcttcgttgaatgacaattcatatagagacaataacttactactttta-tacttattacgatttggtgcacttatcaatt 121  Q
    ||||||||| |||||||||| |||||  |||||||||| ||||||  |||| ||||  |||||| |||||||||  ||||||||||||| ||||||    
T  4529 ataaattattttaattgcttagttgagcgacaattcatgtagagaagataatttac--cttttactacttattataatttggtgcacttgtcaatt 4436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 7366 - 7411
Alignment:
Q  76 aacttactacttttatacttattacgatttggtgcacttatcaatt 121  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||    
T  7366 aacttactactttattacttgttacgatttggtgcacttgtcaatt 7411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University