View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2922_high_23 (Length: 243)
Name: NF2922_high_23
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31106192 - 31106413
Alignment:
| Q |
1 |
atttcattttgacatataatgttgatattgaatggttcaaaataatttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31106192 |
atttcattttgacatataatgttgatattgaatggttcaaaataatttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtc |
31106291 |
T |
|
| Q |
101 |
tcttcaactatatgagtgctgatagtttcagtatttctgctaggtctttgatatcccttgaagacactgcttcgggatgctcctgcgttcataaccttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31106292 |
tcttcaactatatgagtgctgatagtttcagtatttctgctaggtctttgatatcccttgaagtcactgcttcgggatgctcctgcgttcataaccttgt |
31106391 |
T |
|
| Q |
201 |
catcgttgcattcgcttccttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31106392 |
catcgttgcattcgcttccttg |
31106413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 31042595 - 31042699
Alignment:
| Q |
46 |
tttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtctcttcaactatatgagtgctgatagtttcagtatttctgctaggt |
145 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| || || ||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
31042595 |
tttactctaatggtgctgactact----tgtagttctcaattgtcttatttattctattcaactatatgagtggtgatagtttcactatttctgctaggt |
31042690 |
T |
|
| Q |
146 |
ctttgatat |
154 |
Q |
| |
|
||||||||| |
|
|
| T |
31042691 |
ctttgatat |
31042699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 31107925 - 31107988
Alignment:
| Q |
89 |
tcttatttagtctcttcaactatatgagtgctgatagtttcagtatttctgctaggtctttgat |
152 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
31107925 |
tcttatttattctcttcaactatatgagtggtgatagtttcatgatttctgctaggtctttgat |
31107988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University