View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_high_4 (Length: 510)
Name: NF2922_high_4
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 127 - 315
Target Start/End: Original strand, 53939920 - 53940108
Alignment:
| Q |
127 |
atatacaacagttctaccacatgacaacccaattaagttagccaccgaggttgaagggaaacagaacaaccattcagggtcacttcacaacgatccaagt |
226 |
Q |
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| T |
53939920 |
atatacaacagttctaccacatgacaacccaattaagttagccaccgagtttgaagggaaacagaacaaccattcagggtcacttcacaacgatccaagt |
53940019 |
T |
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| Q |
227 |
gagctctaataccccaatacaaccatggtaactaaaattataattttgtaaagggaaaaaattatatttatacaaccactttatgataa |
315 |
Q |
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| T |
53940020 |
gagctctaataccccaatacaaccatggtaactaaaattataattttgtaaagagaaaaaattatatttatacaaccactttatgataa |
53940108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 53939755 - 53939864
Alignment:
| Q |
19 |
ttagcttgaatcgattttggacccccaaatcacgttaaaaaattgatatccatagaatcacgtttgatacactttaacgtgaaatcaaacaagcaaatag |
118 |
Q |
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| T |
53939755 |
ttagcttgaatcgattttggacccccaaatcacgttaaaaaattaatatccatagaatcacgtttgatacactttaacgtgaaatcaaacaagcaaatag |
53939854 |
T |
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| Q |
119 |
acatgagaat |
128 |
Q |
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| T |
53939855 |
acatgagaat |
53939864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 391 - 502
Target Start/End: Original strand, 53940184 - 53940295
Alignment:
| Q |
391 |
tgtcatcaaggttgtctcaattggttgttaaaatatcactaatcttttgttaattatctttaaacaagttgacgagagtatctaaagccaaattctcaca |
490 |
Q |
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| T |
53940184 |
tgtcatcaaggttgtctcaattagttgttaaaatatcactaatcttttgtaaattatctttaaacaagttgacgagagtatctaaagccaaattctcaca |
53940283 |
T |
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| Q |
491 |
ttcattcttctc |
502 |
Q |
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| T |
53940284 |
ttcattcttctc |
53940295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 39241224 - 39241184
Alignment:
| Q |
401 |
gttgtctcaattggttgttaaaatatcactaatcttttgtt |
441 |
Q |
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| T |
39241224 |
gttgtctcaaatggttgttaaaatatcactactcttttgtt |
39241184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 32510904 - 32510871
Alignment:
| Q |
282 |
aaaaaattatatttatacaaccactttatgataa |
315 |
Q |
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| T |
32510904 |
aaaaaattatatttatacaaccaatttatgataa |
32510871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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