View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_high_5 (Length: 454)
Name: NF2922_high_5
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 88 - 442
Target Start/End: Original strand, 38304093 - 38304444
Alignment:
| Q |
88 |
ggaggaagagagtatttaacaaaacttgcatgagaagttaggggaatgggggtaatgccattgtcattgccaatgccgatgatatccttctccaatttgg |
187 |
Q |
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| T |
38304093 |
ggaggaagagagtatttaacaaaacttg-atgagaagttaggggaatggg--taataccattgtcattgccaatgccgatgatatccttctccaatttgg |
38304189 |
T |
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| Q |
188 |
tgtttcgcaatcccaatctcaatccttaccttaccacattcacacgtcaaaaacactctcttcccattcccttcaccaccttcctccatcacctcaaatc |
287 |
Q |
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| T |
38304190 |
tgtttcgcaatcccaatctcaatccttaccttaccacattcacacgtcaaaaacactctcttcccattcccttcaccaccttcctccatcacctcaaatc |
38304289 |
T |
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| Q |
288 |
tccaccaaatcttctccaaaccaaaaaactccacgctcttcttctcatccatggtttcttccacccatcttcaccacacactcctctttcctcacacctt |
387 |
Q |
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| T |
38304290 |
tccaccaaatcttctccaaaccaaaaaactccacgctcttcttctcatccatggtttcttccacccatcttcaccacacactcctctttgctcacacctt |
38304389 |
T |
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| Q |
388 |
gtcaatgcttacgttaactttggttcccaccattacgcttttctctccttctctc |
442 |
Q |
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| T |
38304390 |
gtcaatgcttacgttaactttggttcccaccattacgcttttctcttcttctctc |
38304444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 38303804 - 38303870
Alignment:
| Q |
17 |
agattttacttaacaaccaacttaacttcgaattaaagactcatgattactcacaaaaactttataa |
83 |
Q |
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| T |
38303804 |
agattttacttaacaaccaacctaacttcgaattaaagactcatgattactcacaaaaactttataa |
38303870 |
T |
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