View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_high_6 (Length: 436)
Name: NF2922_high_6
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 420
Target Start/End: Original strand, 7305972 - 7306378
Alignment:
| Q |
12 |
atgaataagtccaaataacacttaccggtgatcctcaaattgtaatactccgggacatgacaaaaatgagctgattatgtacacagatttggatgttttt |
111 |
Q |
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| T |
7305972 |
atgaataagtacaaataacacttaccggtgatcctcaaattgtaatactccgggacatgacaaaaatgagctgattatgtacacagatttggatgttttt |
7306071 |
T |
|
| Q |
112 |
aacaacaattttgaaaactagtttggcagatgaatttgaacaaagtaaatgaataaaacaacaatttgacataagaaaaaataatacaaatttggcggtc |
211 |
Q |
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| T |
7306072 |
aacaacaattttgaaaactagtttggcagatgaatttgaacaaagtaaatgaataaaacaacaatttgacataagaaaa--taatacaaatttggcggtc |
7306169 |
T |
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| Q |
212 |
tgttctcactcttttggtttggaatccaaaccatgcataccgcttaattcattcaccgccaatttatttacagctacgactcgctatttttaattaaaca |
311 |
Q |
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| T |
7306170 |
tgttctcactcttttggtttggaatccaaaccatgcataccgcttaattcattcaccgccaatttatttacagctacgactcgctatttttaattaaaca |
7306269 |
T |
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| Q |
312 |
gaaaactcaactgaatgatttggttgtatagaggagaggatagaaaatttattaagccgacttgactatatgatattattttctttctaaactgtttgat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7306270 |
gaaaactcaactgaatgatttggttgtatagaggagaggatagaaaatttattaagccgacttgactatatgatattattttctttctaaactgtttgat |
7306369 |
T |
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| Q |
412 |
gcattgatt |
420 |
Q |
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| T |
7306370 |
gcattgatt |
7306378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 7296924 - 7297030
Alignment:
| Q |
71 |
acaaaaatgagctgattatgtacacagatttggatgtttttaacaacaattttgaaaactagtttggcagatgaatttgaacaaagtaaatgaataaaac |
170 |
Q |
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|||||||| |||||| |||| | ||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||| |
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| T |
7296924 |
acaaaaattagctgactatggaaacagatttggatgttcttaactctaattttgaaaactagtctggcttatgaatttgaacaaagtaaatgtgtaaaac |
7297023 |
T |
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| Q |
171 |
aacaatt |
177 |
Q |
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|| |||| |
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| T |
7297024 |
aagaatt |
7297030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 789020 - 788976
Alignment:
| Q |
244 |
atgcataccgcttaattcattcaccgccaatttatttacagctac |
288 |
Q |
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| T |
789020 |
atgcataccacttaattcattcaacacctatttatttacagctac |
788976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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