View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2922_low_1 (Length: 857)
Name: NF2922_low_1
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 279 - 840
Target Start/End: Complemental strand, 49096436 - 49095878
Alignment:
| Q |
279 |
ctcaatcaaattacaagttagtaataaattttattgatcgtgatgggaaactacgtttcatgcaccttagcaccaccgttgatgaggaacgcaaaagcaa |
378 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49096436 |
ctcaatcaaattacaag---gtaataaattttattgatcgtgatgggtaactacgtttcatgcaccttagcaccaccgttgatgaggaacgcaaaagcaa |
49096340 |
T |
|
| Q |
379 |
caagagtaatccttccaacaggagaagtgaaacaattcagagaaatcatgaaagctgctgagcttatgttagagaatccaaattatttcttagtcaactc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49096339 |
caagagtaatccttccaacaggagaagttaaacaattcagagaaatcatgaaagctgctgagcttatgttagagaatccaaattatttcttagtcaactc |
49096240 |
T |
|
| Q |
479 |
tcgatctcttcatatttctacaagattctctcctcttgctgcagatgaagaattagaatttggaaatgtttacatcttttttcctatgagaaggctcaat |
578 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49096239 |
tcgatctcttcatatttctacaagattttctcctcttgctgcagatgaagaattggaatttggaaatgtttacatcttttttcctatgagaaggctcaat |
49096140 |
T |
|
| Q |
579 |
tctgtggtcaccggagctgacatggcggtgctgtttttggcggcgaattcggcggcgaagcgattacgtgctggaaaaacacgtgttcagccggatgaaa |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49096139 |
tctgtggtcaccggagctgacatggcggtgctgtttttggcggcgaattcggcggcgaagcgattacgtgctggaaaaacacgtgttcaaccggatgaaa |
49096040 |
T |
|
| Q |
679 |
gttcggaagtgaagggtgatggtattgagaatgatcaaaatgaatgtgttccaaggttgagtttggaaggtgtggaatcagggtttagttataggttaag |
778 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49096039 |
gttcggaagtgaagggtgatggtgttgagaatgatcaaaatgaatgtgttccaaggttgagtttggaaggtgtggaatcagggtttagttataggttaag |
49095940 |
T |
|
| Q |
779 |
ttattgtagatcnnnnnnncctattttggagactataaatgaagaaccaattaggtcaagat |
840 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49095939 |
ttattgtagatcaaaaaaacctattttggagactataaatgaagaaccaattaggtcaagat |
49095878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 49096690 - 49096545
Alignment:
| Q |
8 |
cagcacagacacacaccggtcaacaaatctcaatctgacacacgcacatgctaatttcatttcattgcataaattacaatatcatgcacattcaatcatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49096690 |
cagcacagacacacaccggtcaacaaatctcaatctgacacacgcacatgctaatttcatttcattgcataaattacaatatcatgcacattcaataatc |
49096591 |
T |
|
| Q |
108 |
aatatactattccaataatattccattgactatactcttccttaat |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49096590 |
aatatactattccaataatattccattgactatactcttccttaat |
49096545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University