View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_low_10 (Length: 418)
Name: NF2922_low_10
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 107 - 281
Target Start/End: Complemental strand, 23434110 - 23433936
Alignment:
| Q |
107 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccacaaacataataatagttatcttacaaaataac |
206 |
Q |
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| T |
23434110 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccgcaaacataataatagttatcttacaaaataac |
23434011 |
T |
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| Q |
207 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactagttgaatctcattatgttcttct |
281 |
Q |
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| T |
23434010 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactggttgaatctcattatgttcttct |
23433936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 23433869 - 23433803
Alignment:
| Q |
348 |
cacaagcttaatctcattctattcttcggggtttttggggttagttttgtttgcttaatattcttgg |
414 |
Q |
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| T |
23433869 |
cacaagcttaatctcattctattcttcggggtttctggggttagttttgtttgcttaatattgttgg |
23433803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23434220 - 23434180
Alignment:
| Q |
1 |
tccctcaatgacattttctccacacattcacgttccagttt |
41 |
Q |
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| T |
23434220 |
tccctcaatggcattttctccacacattcacgttcctgttt |
23434180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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