View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2922_low_11 (Length: 368)

Name: NF2922_low_11
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2922_low_11
NF2922_low_11
[»] chr5 (3 HSPs)
chr5 (19-326)||(39777248-39777554)
chr5 (69-220)||(32743653-32743800)
chr5 (323-368)||(39779403-39779448)
[»] chr6 (3 HSPs)
chr6 (139-326)||(1094385-1094573)
chr6 (136-257)||(1090696-1090817)
chr6 (132-303)||(34249315-34249486)
[»] chr1 (2 HSPs)
chr1 (139-309)||(29360204-29360373)
chr1 (136-313)||(5716850-5717026)
[»] scaffold0466 (1 HSPs)
scaffold0466 (132-320)||(8234-8421)
[»] chr8 (4 HSPs)
chr8 (140-309)||(9229234-9229403)
chr8 (132-311)||(25678030-25678208)
chr8 (132-261)||(25391406-25391534)
chr8 (171-311)||(25358412-25358553)
[»] scaffold0009 (1 HSPs)
scaffold0009 (129-207)||(3287-3364)
[»] chr2 (1 HSPs)
chr2 (170-242)||(40709194-40709267)
[»] chr3 (1 HSPs)
chr3 (190-223)||(27049173-27049206)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 39777248 - 39777554
Alignment:
Q  19 ccactagcatcatatatatactctatattaaagagagaagatggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatcg 118  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39777248 ccactagcatcatatatatactct-tataaaagagagaagagggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatcg 39777346  T
Q  119 ttcttctaccataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagca 218  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||    
T  39777347 ttcttctaccataattttgggcattgttattgaagctccatcgtgttcagacctcgagtgcataggttcaaacacgcagttgtgtaaactttggggagca 39777446  T
Q  219 aaaccggatctgggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctat 318  Q
    ||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39777447 aaaccggatctgggttgtaccggaggtccaccgaaaattcgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctat 39777546  T
Q  319 ccaaaatc 326  Q
    ||||||||    
T  39777547 ccaaaatc 39777554  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 32743800 - 32743653
Alignment:
Q  69 tagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttcttctaccataattttgggcattgttagtgaagctccatcgtgttcag 168  Q
    |||||| | |||| ||||||||||||||||||||||| |||| | | | ||||||  |   |||||||||| |||||| ||||||||||||||||||  |    
T  32743800 tagaaatgcagctgatcatgctttctattaagctctcttcttctttcttgttctttga---taattttgggtattgtttgtgaagctccatcgtgtt-tg 32743705  T
Q  169 acctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaa 220  Q
     |||| ||||||   |||| |||| |||||||||||||| |||| |||||||    
T  32743704 gcctcaagtgcatgagttcagacaagcagttgtgtaaaccttggggagcaaa 32743653  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 39779403 - 39779448
Alignment:
Q  323 aatcaaggaaagatatgagatccattacctcactgatctggccttc 368  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  39779403 aatcaaggaaagatatgagatccattacctcactgatccggccttc 39779448  T

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Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 139 - 326
Target Start/End: Complemental strand, 1094573 - 1094385
Alignment:
Q  139 gcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttgca- 237  Q
    |||||||| ||||||||||||||||||||| ||||||||||||  ||||  |||||||||||||||||| || | |||||||||||||| |||||||||     
T  1094573 gcattgtttgtgaagctccatcgtgttcaggcctcgagtgcacgagttcacacacgcagttgtgtaaaccttagggagcaaaaccggatttgggttgcac 1094474  T
Q  238 ccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc 326  Q
    |||||| ||||  ||||||||||| ||| | || ||  |||||||| |||||||||| |||||||||||||||||| |||| |||||||    
T  1094473 ccggagatccaccgaaaatttgctttcaggacagtgacttttgtcacggcacaacaactctcttctatctttcctatctattcaaaatc 1094385  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 1090817 - 1090696
Alignment:
Q  136 tgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttg 235  Q
    ||||||||||| ||||| |||| |||||||||| |||||||||  |  |||| |||||| |||||||||||  |||| ||| |||||||||| |||||||    
T  1090817 tgggcattgtttgtgaaactccgtcgtgttcaggcctcgagtgtccgagttcagacacgtagttgtgtaaatcttggggagtaaaaccggatttgggttg 1090718  T
Q  236 caccggaggtccattgaaaatt 257  Q
    ||| | |||||||| |||||||    
T  1090717 cactgaaggtccatcgaaaatt 1090696  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 303
Target Start/End: Original strand, 34249315 - 34249486
Alignment:
Q  132 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg 230  Q
    |||||||||||||||  |||||||||||||||||  || |||||||||||  |||| |||| |||||| ||||||  |||| ||||||||| ||||  ||    
T  34249315 attttgggcattgtttatgaagctccatcgtgtt-tgatctcgagtgcacgagttcagacatgcagttatgtaaatcttggggagcaaaactggataatg 34249413  T
Q  231 ggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttct 303  Q
     ||||||| |||||||||  |||||||| || |||  |||||||||||   || ||||||||||  |||||||    
T  34249414 agttgcactggaggtccaccgaaaattttctttcagagcaatggttttgaccacggcacaacaaaactcttct 34249486  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 309
Target Start/End: Original strand, 29360204 - 29360373
Alignment:
Q  139 gcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgca 237  Q
    ||||||||  |||||||||||||||||  | |||| |||||||   ||| ||||||||||||||||||| |||  |||||||| ||||| | ||||||||    
T  29360204 gcattgtttatgaagctccatcgtgtttgg-cctcaagtgcacgaattcagacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgca 29360302  T
Q  238 ccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatcttt 309  Q
    |||||||||||  ||||||||||| |||||||| ||  |||||||  ||||||||||||||||| |||||||    
T  29360303 ccggaggtccaccgaaaatttgctttcaaggcagtgacttttgtc-gggcacaacaattctcttatatcttt 29360373  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 313
Target Start/End: Original strand, 5716850 - 5717026
Alignment:
Q  136 tgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttg 235  Q
    |||||||| || ||||||||||||||| ||  ||| ||||||| |   |||  |||||||||||||||||| ||||| |||||||| ||||  |||||||    
T  5716850 tgggcattatttgtgaagctccatcgttttt-gacttcgagtggatgagtttagacacgcagttgtgtaaattttggggagcaaaatcggacttgggttg 5716948  T
Q  236 caccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttccta 313  Q
    ||||||| || ||  | ||||||||  ||| |||| ||||||||  || |||||||||| ||||||||||||||||||    
T  5716949 caccggaagtacaccggaaatttgcattcagggcagtggtttttaccacggcacaacaactctcttctatctttccta 5717026  T

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Target: scaffold0466 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 8421 - 8234
Alignment:
Q  132 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgg 231  Q
    |||||||| |||||| ||||||||||| |||| | || |||| |||||||  |||| |||||| |||||||||||| |||| |||||||||||||| |      
T  8421 attttgggtattgtttgtgaagctccaacgtgct-ag-cctcaagtgcacgagttcagacacgtagttgtgtaaacattggggagcaaaaccggatatta 8324  T
Q  232 g-ttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatcc 320  Q
      ||||||| ||||||||||| ||||||||| ||| |||| | | ||||| || ||| |||||| ||||||||||||||| || ||||||    
T  8323 aattgcaccagaggtccattggaaatttgctttcatggcagttgcttttgccacggcgcaacaactctcttctatctttcgtatctatcc 8234  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 309
Target Start/End: Complemental strand, 9229403 - 9229234
Alignment:
Q  140 cattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgcac 238  Q
    ||||||| |||||||||||| |||||  | |||  |||||||  |||| |||| ||| |||||||||| ||||||||||||||||||| | ||||||||     
T  9229403 cattgtttgtgaagctccattgtgttt-gcccttaagtgcacgagttcagacatgcaattgtgtaaaccttggagagcaaaaccggatattgggttgcat 9229305  T
Q  239 cggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatcttt 309  Q
    | |||||| || |||||||| || |||  | | ||||||| | || |||||||||||||||||||||||||    
T  9229304 ctgaggtctatcgaaaattttctttcagagtagtggttttggccacggcacaacaattctcttctatcttt 9229234  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 311
Target Start/End: Original strand, 25678030 - 25678208
Alignment:
Q  132 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg 230  Q
    ||||||||||||||| ||||||||||| | || |  | ||||||||||||  |||| || ||| |||||||||||| ||||| |||||||||||||  ||    
T  25678030 attttgggcattgtttgtgaagctccaacatgct--ggcctcgagtgcacgagttcagatacgtagttgtgtaaaccttggaaagcaaaaccggatattg 25678127  T
Q  231 ggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcc 311  Q
    | ||||||||||||||||  ||||||||||| |||   || ||| ||||  || | |||||||  ||||||||||||||||    
T  25678128 gattgcaccggaggtccaccgaaaatttgctttcatttcagtggctttttccacgacacaacatctctcttctatctttcc 25678208  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 25391406 - 25391534
Alignment:
Q  132 attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg 230  Q
    |||||||||||||||  ||||||||||  ||| |  | ||||||||||||  |||| || ||  |||||||||||| |||| ||||||||||||||  ||    
T  25391406 attttgggcattgtttatgaagctccaaagtgct--ggcctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattg 25391503  T
Q  231 ggttgcaccggaggtccattgaaaatttgct 261  Q
    | ||||||||||||||||  |||||||||||    
T  25391504 gattgcaccggaggtccaccgaaaatttgct 25391534  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 311
Target Start/End: Original strand, 25358412 - 25358553
Alignment:
Q  171 ctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccggaggtccattgaaaatttgctctcaaggc 269  Q
    |||||||||||  |||| || ||  |||||||||||| |||| ||||||||||||||  ||| ||||||||||||||||  ||||||||||| |||   |    
T  25358412 ctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcatttc 25358511  T
Q  270 aatggtttttgtcatggcacaacaattctcttctatctttcc 311  Q
    | ||  ||||  || |||||||||  ||||||||||||||||    
T  25358512 agtgactttttccacggcacaacatctctcttctatctttcc 25358553  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 3364 - 3287
Alignment:
Q  129 ataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaac 207  Q
    |||||||||| |||| || ||||||||||||||||||  |||||||||||||| ||||| |||||| | |||| |||||    
T  3364 ataattttggacattatttgtgaagctccatcgtgtt-tgacctcgagtgcacgggttcagacacgaaattgtataaac 3287  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 40709194 - 40709267
Alignment:
Q  170 cctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccgga 242  Q
    |||||||||||  ||||| |||| |||||  |||||||||||| ||||||||||||||  ||||||||||||||    
T  40709194 cctcgagtgcatgggttcagacatgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccgga 40709267  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 27049173 - 27049206
Alignment:
Q  190 acacgcagttgtgtaaactttggagagcaaaacc 223  Q
    ||||| ||||||||||||||||||||||||||||    
T  27049173 acacgtagttgtgtaaactttggagagcaaaacc 27049206  T

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