View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_low_12 (Length: 364)
Name: NF2922_low_12
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 14254230 - 14254589
Alignment:
| Q |
1 |
gtcttttaacactcgttggttcatttcattttca----ttcattcgacttcaacaacaatggacatagccgttttatatagttttgaaaatgtgaggatt |
96 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14254230 |
gtcttttaacactcgttggttcatttcattttcattcattcattcgacttcaacaacaatggacatagccgttttatatagttttgaaaatgtgaggatt |
14254329 |
T |
|
| Q |
97 |
aagatatcatatgattaatcatcacaacacaacacaacgattatatctcaattaatccttaattaatctacaaactaattctccatttcattttctccct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14254330 |
aagatatcatatgattaatcatcacaacacaacacaacgattatatctcaattaatccttaattaatctacaaactaattctccatttcattttctccct |
14254429 |
T |
|
| Q |
197 |
tcaaacnnnnnnnnnnnnnnnnnnncaacaaacgccattttctggttactgattcgaacgaagatcaaaattcaacttcatcaaaacgctatcgttttca |
296 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14254430 |
ccaaacctctctctctctctctctccaacaaacgccattttctggttactgattcgaacgaagatcaaaattcaacttcatcaaaacgctatcgttttca |
14254529 |
T |
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| Q |
297 |
gatctgaatcgaaaatctcgagttcccgattcggtttcgtctcactttcatgttcatctc |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14254530 |
gatctgaatcgaaaatctcgagttcccgattcggtttcgtctcactttcatgttcttctc |
14254589 |
T |
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