View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_low_21 (Length: 278)
Name: NF2922_low_21
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 28187946 - 28187705
Alignment:
| Q |
21 |
cacacttaaagaagattggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatc |
120 |
Q |
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| T |
28187946 |
cacactgaaagaagattggatagagtgatttgtaatcaaaactggctggatgtttgcaactctctgaatgtgtcaacactggtaaagcacaagtcggatc |
28187847 |
T |
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| Q |
121 |
attttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggat |
220 |
Q |
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| T |
28187846 |
actttccactattacttgaatttgataattctactcatagttttacttcccaatttaaattcatgcaattgtggacccatcataaagattgtcacagggt |
28187747 |
T |
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| Q |
221 |
gatacaagaagtttcgaataccaatatcgttgcatgtcatat |
262 |
Q |
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| T |
28187746 |
gatacaagaagtctggaacacaaatattgttggctgtcatat |
28187705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 14720112 - 14720201
Alignment:
| Q |
175 |
tcaaattcatgcatatgtggacacatcatgaggattgtcataggatgatacaagaagtttcgaataccaatatcgttgcatgtcatatgt |
264 |
Q |
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| T |
14720112 |
tcaaattcatgcatatgtgcacacatcatgaggattgtcataggatgatacaagaagattggaataccaatatcgttggatgtcatatgt |
14720201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 7572280 - 7572491
Alignment:
| Q |
21 |
cacacttaaagaagattggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatc |
120 |
Q |
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| T |
7572280 |
cacactgaaagaagattggatagagttatttttaatcaacaccggctggatgtctgcaattctctgaatgtgtcaacactggtaaagcataagtctgatc |
7572379 |
T |
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| Q |
121 |
attttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggat |
220 |
Q |
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| T |
7572380 |
actttccactgttacttgaatttgataattcttctcatagttttgcttcccaatttaaatttatgcaaatgtggacccaccataaagattgtcgcagggt |
7572479 |
T |
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| Q |
221 |
gatacaagaagt |
232 |
Q |
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| T |
7572480 |
gatacaagaagt |
7572491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 10009597 - 10009703
Alignment:
| Q |
105 |
aagcacaagtctgatcattttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatg |
204 |
Q |
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| T |
10009597 |
aagcacaagtcagatcattttcctcttttagttgagtttgaaacttctcatcatagttttttgtcgcaatttaagtttatgcaaatgtggattcatcatg |
10009696 |
T |
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| Q |
205 |
aggattg |
211 |
Q |
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| T |
10009697 |
aagattg |
10009703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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