View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_low_26 (Length: 249)
Name: NF2922_low_26
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 38304890 - 38304650
Alignment:
| Q |
9 |
cacagacgccacaataaccgaatcagccttcaaaccttccaatctcatcttcctaaacaacaaaaccgcttcatcccattcaccattccacacattccca |
108 |
Q |
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| T |
38304890 |
cacagacgccacaataaccgaatcagccttcaaaccttccaatctcatcttcctaaacaacaaaaccgcttcatcccattcaccattccacacattccca |
38304791 |
T |
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| Q |
109 |
caaatcaacgcagtccaagtcgccaaatctctaacattcatttcatcaaacaccttacgcgcatcttccaaactttcacattttacaaacatatcaatca |
208 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38304790 |
caaatcaacgcagtccaagtcgccaaatctctcacattcatttcatcaaacaccttacgcgcatcttccaaactttcacattttacaaacatatcaatca |
38304691 |
T |
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| Q |
209 |
aagcacactggacaaaaagattagccttttcctcattaatc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38304690 |
aagcacactggacaaaaagattagccttttcctcattaatc |
38304650 |
T |
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