View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_low_30 (Length: 242)
Name: NF2922_low_30
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 12606462 - 12606671
Alignment:
| Q |
18 |
attactagtcacactgtttgtgtcatggatgcttcaggtcaattaggctttagccttgttcaaagacttcttcaaagaggctataccgttcatgcatcca |
117 |
Q |
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| T |
12606462 |
attactagtcacactgtttgtgtcatggatgcttcaggtcaattaggctttagccttgttcaaagacttcttcaaagaggctataccgttcatgcatcca |
12606561 |
T |
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| Q |
118 |
ttcaacaatatggtacatattatgtcattaattgcttttttattttgtcaaattcatcttaagaaaataagtggagaattcgaactctcatcactgcata |
217 |
Q |
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| T |
12606562 |
ttcaacaatatggtacatattatgttattaattgcttttttattttgtcaaattca--ataagtggagaattcgtg-attcgaactctgatcactgcata |
12606658 |
T |
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| Q |
218 |
tctcaatattctt |
230 |
Q |
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| T |
12606659 |
tctcaatattctt |
12606671 |
T |
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