View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2922_low_4 (Length: 590)
Name: NF2922_low_4
Description: NF2922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2922_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 20 - 578
Target Start/End: Original strand, 7684154 - 7684712
Alignment:
| Q |
20 |
ctaggatcttaagatacgaccaaggaatctctaaatacacaatccgataccacgcaactaatgagcaccctattcctcgatgcatgaaaggaataacacc |
119 |
Q |
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| T |
7684154 |
ctaggatcttgggatacgaccaaggaatctctaaatacacaatccgataccacgcaactaatgagcaccctattcctcgatgcatgaaaggaataacacc |
7684253 |
T |
|
| Q |
120 |
gctacttgaatttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcacttgctaccaaaattccactattgaaactaaagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7684254 |
gctacttgaatttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcacttgctaccaaaattcaactattgaaactaaagc |
7684353 |
T |
|
| Q |
220 |
ttttccccatggattgcctagattgcaggctcctgctaaagccattgcctcctgttgctgccagcttgaaataatttaaaattaaccacatatagctcct |
319 |
Q |
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| T |
7684354 |
ttttccccatggattgcctagattgcaggctcctgctaaagccattgcctcctgttgctgccagcttgaaataatttaaaattaaccacatatagctcct |
7684453 |
T |
|
| Q |
320 |
taatacacacaacactccctctgcttccaaacatagcccaactttgtatttagccgagaacatctgaacttgaccatcaccagccgctgcaaccacaaca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7684454 |
taatacacacaacactccctctgcttccaaacatagcccaactttgtatttagccgagaacatctgaacttgaccatcaccagccgctgcaaccacaaca |
7684553 |
T |
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| Q |
420 |
aaaccacgatcgcaagacaccaaagcaacgcagtttaacaccagccacatattgatatccaggactccaacaacctcccttaagcgaaaagcaccaagga |
519 |
Q |
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| T |
7684554 |
aaaccacgatcgcaagacaccaaagcaacgcagtttaacaccagccacatattgatatccaggactccaacaacctcccttaagcgaaaagcaccaacga |
7684653 |
T |
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| Q |
520 |
tgataataagagactgcaccatttttattcaaacattaataacgccaagacacgcccta |
578 |
Q |
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| T |
7684654 |
tgataataagagactgcaccatttttattcaaacattaataacgccaagacacgcccta |
7684712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 25812365 - 25812213
Alignment:
| Q |
31 |
agatacgaccaaggaatctctaaatacacaatccgataccacgcaactaatgagcaccctattcctcgatgcatgaaaggaataacaccgctacttgaat |
130 |
Q |
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||||| ||||||| ||||||| |||||||||||||||| ||| ||||||| |||||| ||||||| || |||||||||| | ||| | ||||| || |
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| T |
25812365 |
agatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagagcacttgattcctctatacatgaaaggatt---accacgacttgtat |
25812269 |
T |
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| Q |
131 |
ttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcac |
186 |
Q |
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|||||||||| |||||| ||||| |||||||| |||| | |||||||||| |||| |
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| T |
25812268 |
ttcttaatcatttgtgcgccttagatcagctcaaatatgtcctcaaatcaatgcac |
25812213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 7426185 - 7426108
Alignment:
| Q |
171 |
tctcaaatcaaagcac-ttgctaccaaaatt-ccactattgaaactaaagcttttccccatggattgcctagattgca |
246 |
Q |
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||||| ||||| |||| |||||||||| ||| ||||| ||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
7426185 |
tctcagatcaatgcacattgctaccaatatttccactcttgaagctaaagcttttccccatggtttgccaagattgca |
7426108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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