View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_high_12 (Length: 395)
Name: NF2923_high_12
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 245 - 384
Target Start/End: Complemental strand, 10469281 - 10469142
Alignment:
| Q |
245 |
gtggtggtggttacattgtagggggatgttaattccgggtgaaatcgctgctgaatcatacaaaaaagcagttgaatcagcgattcagaaactgagagat |
344 |
Q |
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| T |
10469281 |
gtggcggtggttgcattgtagtggaaagttaattccgagtggaatcgctgatgactcatacaaaaaagcagttgaatcagcgattcagaaactgagagat |
10469182 |
T |
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| Q |
345 |
gaggaagtagaagaagatgatgaagaagccaatgatgatg |
384 |
Q |
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| T |
10469181 |
gaggaagttgaagaagatgatgaagaagccaatgatgatg |
10469142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 10469484 - 10469383
Alignment:
| Q |
33 |
gacattttctatttgagtcttgtggttgtgtatgtgttatccgtgctttctattgcactgataacagagaaatttcttttaacagccaaaatttgtaata |
132 |
Q |
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| T |
10469484 |
gacattttctatttgagtcttgtg------tatgtgtta---gtgctttctattgcacggataacagattaatttcttttaacagccaaaatttctaata |
10469394 |
T |
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| Q |
133 |
aaataaatacg |
143 |
Q |
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| T |
10469393 |
aaataaatacg |
10469383 |
T |
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