View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_high_28 (Length: 241)
Name: NF2923_high_28
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32209573 - 32209347
Alignment:
| Q |
1 |
atctccacacacatcacctcttcaactatatatatat--gtggttaattagtcacttgtagagtattcaaacatcaaatatatacacaccttcatttact |
98 |
Q |
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| T |
32209573 |
atctccacacacatcacctcttcaactatatatatatatgtggttaattagtcacttgtagagtattcaaacatcaaatatatacac--cttcctttact |
32209476 |
T |
|
| Q |
99 |
atatatcttgaataacttgttcacataacaaagtttaaagtataaagagaatcaatggctgctactgctagtgtattttcaatgaaaggttcttcaaagg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32209475 |
atatatcttgaataacttgttcacataacaaagtttaaagtataaagagaatcaatggctgctactgctagtgtattttcaatgaaaggttcttcaaagg |
32209376 |
T |
|
| Q |
199 |
ttcgatcattaggacggtacagttcaaag |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32209375 |
ttcgatcattaggacggtacagttcaaag |
32209347 |
T |
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