View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_high_32 (Length: 217)
Name: NF2923_high_32
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 49987332 - 49987537
Alignment:
| Q |
1 |
tctatctatatttattcaaaaatagaaaacacataacccataactgctatacataactgacacataaaaacacaactgcccataaccgccatcataagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49987332 |
tctatctatatttattcaaaaatagaaaacacataacccataactgctatacataactgacacataaaaacacaactgcccataaccgccatcataagaa |
49987431 |
T |
|
| Q |
101 |
gtctaacatctcgacgtttgtcttggtgcttttaaaggtgccaatcatactcactgacgggtctatagataaagtaatcaccaatgctgtgttttctcac |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49987432 |
gtctaacatctcgatgtttgtcttggtgcttttaaaggtgccaatcatactcactgacgggtctatagataaagtaatcaccaatgctgtgttttctcac |
49987531 |
T |
|
| Q |
201 |
attcat |
206 |
Q |
| |
|
|||||| |
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|
| T |
49987532 |
attcat |
49987537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16772930 - 16773037
Alignment:
| Q |
1 |
tctatctatatttattcaaaaatagaaa-acacataacccataactgctatacataactgacacataaaaacacaactgcccataaccgccatcataaga |
99 |
Q |
| |
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||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
16772930 |
tctatctatatttattctaaac-agaaacacacataacccataactgctaaacataactgacacataaaagcaaaactgcccataaccgccatcataaga |
16773028 |
T |
|
| Q |
100 |
agtctaaca |
108 |
Q |
| |
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||||||||| |
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|
| T |
16773029 |
agtctaaca |
16773037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 44260892 - 44260951
Alignment:
| Q |
5 |
tctatatttattcaaaaatagaaa-acacataacccataactgctatacataactgacac |
63 |
Q |
| |
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||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
44260892 |
tctatatttattctaaaacagaaacacacataacccataattgctatacataactgacac |
44260951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 20936552 - 20936451
Alignment:
| Q |
5 |
tctatatttattcaaaaatagaaaacacataacccataactgctatacataactgacac---ataaaaacacaactgcccataaccgccatcataagaag |
101 |
Q |
| |
|
||||||||| ||| |||| ||||| |||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||| |
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| T |
20936552 |
tctatattttttctaaaacagaaa-cacacaacccataacttctatacataactgacacataataaaaacataacagcccatacccgccatcataagaag |
20936454 |
T |
|
| Q |
102 |
tct |
104 |
Q |
| |
|
||| |
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|
| T |
20936453 |
tct |
20936451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 24060432 - 24060330
Alignment:
| Q |
9 |
tatttattcaaaaatagaaa-acacataacccataactgctatacataactgacacataa---aaacacaactgcccataaccgccatcataagaagtct |
104 |
Q |
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||||||||| |||| ||||| |||||||||||||||||||||||| ||| |||||||||| |||| |||| |||||||||||| ||||||||||||| |
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| T |
24060432 |
tatttattctaaaacagaaacacacataacccataactgctatac-taattgacacataataaaaacctaacttcccataaccgccgtcataagaagtct |
24060334 |
T |
|
| Q |
105 |
aaca |
108 |
Q |
| |
|
|||| |
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|
| T |
24060333 |
aaca |
24060330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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