View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_high_4 (Length: 522)
Name: NF2923_high_4
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Complemental strand, 30190103 - 30189611
Alignment:
| Q |
11 |
cacagagcaccatatatgccatacgccaactagaagaaataaggttccaggcaaaatatgacctatgaaagatcccatttttctgatttacttttaccac |
110 |
Q |
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| T |
30190103 |
cacagagcaccatatatgccatacgccaactagaagaaataaggttccaggcaaaatatgacctatgaaagatcccatttttctgatttacttttaccac |
30190004 |
T |
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| Q |
111 |
tctcaaaataaataattcaagttcacttagtacttgtttggttccgcatccagcttgtaaatcttgtgtctccgtgtcgtttacactgcagttttatgaa |
210 |
Q |
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| T |
30190003 |
tctcaaaataaataattcaagttcacttagtacttgtttggttccgcatccagcttgtaaatcttgtgtctccgtgtcgtttacactgcagttttatgaa |
30189904 |
T |
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| Q |
211 |
ggtagaaattcaagctacagtctcactaaaatgcacttaatcaattggatccttgaatgattcttcagctgattatagcaacttaaatgtttccatcttg |
310 |
Q |
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| T |
30189903 |
ggtagaaactcaagctacagtctcactaaaatgcacttaatcaactggatccttgaatgattcttcagctgatcatagcaactaaaatgtttccatcttg |
30189804 |
T |
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| Q |
311 |
taaacataccaaagaatcctgnnnnnnnnaataaaagc-aatcagttttcaaactttcagtgacaaacttttcggatgaaagttcaatatcatcttataa |
409 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30189803 |
taaacataccaaagaatcctg-tttttttaataaaagcaaatcagttttgaaactttcagtgac-aacttttcggatgaaagttcaatatcatcttataa |
30189706 |
T |
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| Q |
410 |
cacattggaatcagcatacaaacaacgtatgtatgcttttacagattccatatcaaaattttgaactactttgccagctatttctactttgaaag |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30189705 |
cacattggaatcagcatacaaacaacgtatgtatgcttttacagattccatatcaaaattttgaactactttgccagctatttctgctttgaaag |
30189611 |
T |
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