View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_high_5 (Length: 521)
Name: NF2923_high_5
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_high_5 |
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| [»] scaffold0421 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Original strand, 30032961 - 30033458
Alignment:
| Q |
19 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30032961 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaag |
30033060 |
T |
|
| Q |
119 |
ccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttgaacttcttcatagaacttgtccattatggtctgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30033061 |
ccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttgaacttcttcatagaacttgtccattatggtctgat |
30033160 |
T |
|
| Q |
219 |
gtgtgtgtg-aagagattttatgacacttcaattagacacttagctacataaagtctaaggtggcaccataatttatggaggtatgttacttgaaacaaa |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
30033161 |
gtgtgtgtgcaagagattttatgacacttcaattagacacttggctacataaagtctaa-gtggcaccataatttatagaggtatgttacttgaaacaaa |
30033259 |
T |
|
| Q |
318 |
tattttaggcaatatccctcnnnnnnnnnnnnttaggcaataaaagaatgttgaaaagagtaagtgtttgagagagcatctaataaaagagtgagtatta |
417 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30033260 |
tattttaggcaatatccctcaaaaaaaaaaaattaggcaataaaagaatgttgaaaagagtaagtgtttgagagagcatctaataaaagagtgagtatta |
30033359 |
T |
|
| Q |
418 |
gatatagtgtttaaaagagaaatttgctagcattctccgtagtaaaaacataattaattgtgtttctgtgatcataactcaattagaccctatgctact |
516 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| |
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|
| T |
30033360 |
gagatagtgtttaaaagaaaaatttgctagcattctccgtaataaaaacataattaattgtgtttccgtgaccataactcaattagaccctaggctact |
30033458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 30049061 - 30049264
Alignment:
| Q |
19 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||| || |||| |||| |
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|
| T |
30049061 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtatagctaatgaattatcaaatggaatagctaattccaaaaag |
30049160 |
T |
|
| Q |
119 |
ccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttgaacttcttcatagaacttgtccattatggtctgat |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||| || | |
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|
| T |
30049161 |
gcaaaaacatatgaacatatcacagagctgttgaagtattgaccatgaggactcactggctcttgaacttcttcattgaatttgtccattatggtgtggt |
30049260 |
T |
|
| Q |
219 |
gtgt |
222 |
Q |
| |
|
|||| |
|
|
| T |
30049261 |
gtgt |
30049264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 30063402 - 30063605
Alignment:
| Q |
19 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||| || |||| |||| |
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|
| T |
30063402 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtatagctaatgaattatcaaatggaatagctaattccaaaaag |
30063501 |
T |
|
| Q |
119 |
ccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttgaacttcttcatagaacttgtccattatggtctgat |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||| || | |
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|
| T |
30063502 |
gcaaaaacatatgaacatatcacagagctgttgaagtattgaccatgaggactcactggctcttgaacttcttcattgaatttgtccattatggtgtggt |
30063601 |
T |
|
| Q |
219 |
gtgt |
222 |
Q |
| |
|
|||| |
|
|
| T |
30063602 |
gtgt |
30063605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 30229172 - 30229446
Alignment:
| Q |
19 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaag |
118 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||| || || ||||||||| |
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|
| T |
30229172 |
aaccatgatagaggagaagcgtgggttgatagggatgaaaacatctttgagcaaaggtatagctaatgaattatcaaatggaatcgctaattccagaaag |
30229271 |
T |
|
| Q |
119 |
ccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttgaacttcttcatagaacttgtccattatggtctgat |
218 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||| | || | |
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|
| T |
30229272 |
ccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggt |
30229371 |
T |
|
| Q |
219 |
gtgtgtgtgaagagattttatg--acacttcaattagacacttagctacataaagtctaaggtggcaccataatttat |
294 |
Q |
| |
|
||||| | |||||||| ||| ||||||||| |||||||| |||||| |||| | ||||| ||||||| |||||| |
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|
| T |
30229372 |
gtgtgag---agagatttgatgtaacacttcaactagacactgagctaccaaaagcccaaggttgcaccatgatttat |
30229446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 30219903 - 30219711
Alignment:
| Q |
19 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaag |
118 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||| | |||||||||||| |||||||| ||| |||||| ||||| ||||||||| || |||||||| |
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|
| T |
30219903 |
aaccataatagaggagaaacgtggattgataggaaggaagacatctttaagcaaaggcatagtttgtgagtcatcaattggaatagctaattccagaaac |
30219804 |
T |
|
| Q |
119 |
ccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttgaacttcttcatagaacttgtccattatg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
30219803 |
ccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctcttgaacttcttcattgaatttgtccattatg |
30219711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 30049303 - 30049372
Alignment:
| Q |
243 |
acttcaattagacacttagctacataaagtctaaggtggcaccataatttatggaggtatgttacttgaa |
312 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
30049303 |
acttcagttagacactttgctacataaagcataaggtggcaccataatttatacaagtatggtacttgaa |
30049372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 30063644 - 30063695
Alignment:
| Q |
243 |
acttcaattagacacttagctacataaagtctaaggtggcaccataatttat |
294 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
30063644 |
acttcagttagacactttgctacataaagcataaggtggcaccataatttat |
30063695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 13833 - 13769
Alignment:
| Q |
101 |
atagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatg |
165 |
Q |
| |
|
||||| || |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
13833 |
atagctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaatattgtccatg |
13769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 13729 - 13680
Alignment:
| Q |
245 |
ttcaattagacacttagctacataaagtctaaggtggcaccataatttat |
294 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13729 |
ttcaatttaacagttagctacataaagtctaaagtggcaccataatttat |
13680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 451
Target Start/End: Complemental strand, 26767812 - 26767760
Alignment:
| Q |
399 |
aataaaagagtgagtattagatatagtgtttaaaagagaaatttgctagcatt |
451 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| | ||||||||||| |
|
|
| T |
26767812 |
aataaaagagtgagtattagatagagtgttcaaaagaaagtgttgctagcatt |
26767760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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