View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_high_6 (Length: 466)
Name: NF2923_high_6
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 26595818 - 26595380
Alignment:
| Q |
14 |
aacctgtgatgcacctaatcggatatattctcaataatttccacagtttaagaaagnnnnnnnn---tccacagtttaattaaacaattagacaaagttc |
110 |
Q |
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| T |
26595818 |
aaccagtgatgcacctaatcggatatattctcaataatttccacagtttaagaaagaaaaaaaaaaatccacagtttaattaaacaattagacaaagttc |
26595719 |
T |
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| Q |
111 |
agcggtttagaattgattccaaaaaccttgatcttgtcacaagctccaccaattgaattaagtctagctagctagtctaatttgcataaatatctttata |
210 |
Q |
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| T |
26595718 |
aacggtttagaattgattccaaaaaccttgatctcgtcacaagctccaccaattgaattaagtctagctagctagtctaatttgcataaatatctttata |
26595619 |
T |
|
| Q |
211 |
taacaattaaacctttaagtttgtcaattttacataaaaactaagatgctcacgactttgtgtgtgttcacaaaaattctatgatattttcgatgataat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26595618 |
taacaattaaacctttaagtttgtcaattttacataaaaactaagatgctcacgactttgtgtgtgttcacaaaaattctatgatattttcgatgataat |
26595519 |
T |
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| Q |
311 |
gtggcaattggcacatttgtaatgattcttaatccttctttctgtcccaaatacaatagacccaccaataatcaaagaggataaacttttgtcttcagat |
410 |
Q |
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| T |
26595518 |
gtggcaattggcacatttgtaatgattcttaatccttctttctgtcccaaatacaatagacccaccaataatcaaagaggataaacttttgtcttcagtt |
26595419 |
T |
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| Q |
411 |
ggaatacatagttaagaaatatgcttgggtatatatgac |
449 |
Q |
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| T |
26595418 |
ggaatacatagttaagaaatatgcttgggtatatatgac |
26595380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 26609681 - 26609639
Alignment:
| Q |
22 |
atgcacctaatcggatatattctcaataatttccacagtttaa |
64 |
Q |
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| T |
26609681 |
atgcacgtaaacggatatattctcgataatttccacagtttaa |
26609639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 26601680 - 26601636
Alignment:
| Q |
19 |
gtgatgcacctaatcggatatattctcaataatttccacagtttaa |
64 |
Q |
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| T |
26601680 |
gtgatgcacgtaa-cggatatattctcaatgatttccacagtttaa |
26601636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 420
Target Start/End: Complemental strand, 26609082 - 26609002
Alignment:
| Q |
341 |
aatccttctttctgtcccaaatacaatagacccaccaataatcaaagaggat-aaacttttgtcttcagatggaatacata |
420 |
Q |
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||||||||||| |||||| ||||| | ||||||||| ||||| || ||||| ||||||| |||||||||||||||||| |
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| T |
26609082 |
aatccttctttttgtcccgaatactagagacccaccgataattgaacaggatccaacttttcccttcagatggaatacata |
26609002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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