View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_10 (Length: 466)
Name: NF2923_low_10
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 11397266 - 11397716
Alignment:
| Q |
11 |
cacagatcagttaagtgaaggactcgaaaacagaattggcataatggaaacctcattgagcaggtttgcaatgatcatggattctgttcaaagtgacgta |
110 |
Q |
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| T |
11397266 |
cacagatcagttaagtgaaggactcgaaaacagaattggcataatggaaacctcattgagcaggtttgcaatgatcatggattctgttcaaagtgacgta |
11397365 |
T |
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| Q |
111 |
atgcaagtaaacaaaggaacaaaggaaatgcacttggagagtaagtgaccaacattctaaaaatagtttatgcaagttgtatctataacaatcaacataa |
210 |
Q |
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| T |
11397366 |
atgcaagtaaacaaaggaacaaaggaaatgcacttggagagtaagtgaccaacattgtgaaaatagtttatgcaagttgtatctataacaatcaacataa |
11397465 |
T |
|
| Q |
211 |
gtacttaatatt-----------ggatctttggaaaaaatttagttcttgcattaattcttcattgacaatttgaattcatgtcatcaattttctcagta |
299 |
Q |
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| T |
11397466 |
gtacttaatattaggtagtaacaggatctttggaaaaaatttagttcttgcattaattcttcattgacaatttgaattcatgtcatcaattttctcagta |
11397565 |
T |
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| Q |
300 |
cattttaccaaattttgtatggctgtcacctcctctttgattctctacctatgatggattgtccaaaatattgtctgatggcctttttgcatccattttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11397566 |
cattttaccaaattttgtatggctgtcacctcctctttgattctctacctatgatggattgtccaaaatattgtctgatggcatttttgcatccattttt |
11397665 |
T |
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| Q |
400 |
gtatggctgtcatcaagtgactgatgtaaaagctgtctgatggtcacattg |
450 |
Q |
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| T |
11397666 |
gtatggctgtcatcaagtgactgatgtaaaagctgtctgatggccacattg |
11397716 |
T |
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