View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_11 (Length: 464)
Name: NF2923_low_11
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 67 - 446
Target Start/End: Original strand, 2698540 - 2698923
Alignment:
| Q |
67 |
aagacaccgccctttcaagcattacaatccaaagcacaacctcaaactgtcaaatgattcatatctatatcaactgtacatcaacgatggtgacgatatt |
166 |
Q |
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| T |
2698540 |
aagacaccgtcctttcaagcattacagtccaaagcaaaacctcaaactgtcaaatgattcatacctatatcaactatacatcaatgacggtgacgatatc |
2698639 |
T |
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| Q |
167 |
gatcaaccattttaaaagaaatagcatcacgtcacaaacctagacaatttgaacagaggttttgagaattaagtgccgatattagtaatggtgtt----a |
262 |
Q |
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| T |
2698640 |
gatcaactattttaaacgaaatagtatcacgtcacaaacctagacaatttgaacggaagttttgagaatttagtgtcgatattagtaatggtgttattaa |
2698739 |
T |
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| Q |
263 |
ttaatgaatataat-attcaattcatttatgttactaatcatccattttgataaatctgaataatttacttatcatatttcttggccaaatgtttaaaac |
361 |
Q |
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| T |
2698740 |
ttaatggatataatgattcaattcatttatgttaccaaatatccattttgacaaatctgaataatttacttatcatatttcttggccaaatgtttaaaac |
2698839 |
T |
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| Q |
362 |
tttcctattattattataatttannnnnnnacaccgacttattacttgaaaataggttgcactctagcaatgttagtttagagtc |
446 |
Q |
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| T |
2698840 |
tttcctattattattataattta-ttttttacaccgacttattacttgaaaataggttgcactctagcaatgttagtttagagtc |
2698923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 2698441 - 2698499
Alignment:
| Q |
11 |
cacagaagcaattgcacacgtacccaccatttactatgacaaaaacactcacacataag |
69 |
Q |
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| T |
2698441 |
cacagaagcagttgcacacgtacccaccatttactatgacgaaaacacccacacataag |
2698499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 2701093 - 2701129
Alignment:
| Q |
338 |
atttcttggccaaatgtttaaaactttcctattatta |
374 |
Q |
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| T |
2701093 |
atttcttggccaaatatttaaaactttgctattatta |
2701129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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