View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_12 (Length: 445)
Name: NF2923_low_12
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 4337348 - 4337650
Alignment:
| Q |
15 |
agatgaaagatgtgaaagacttgccaggtaaattttaatttgagctgannnnnnnctcttgaaaactccatatccggcctaaggaccaactaatccgggg |
114 |
Q |
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| T |
4337348 |
agatgaaagatgtgaaagacttgccaggtaaattttaatttgagctgatttttttctcttgaaaactccatatccggcctaaggaccaactaatccgggg |
4337447 |
T |
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| Q |
115 |
g-ataaatcccactaaccactagcgggggc-cccaattgctacaagaacaaagctttgtatctccattgggcccaacacaagaatttttggtacttgggg |
212 |
Q |
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| T |
4337448 |
ggataaatcccactaaccactagcgggggggcccaattgctaccagaacaaagctttgtatggagc---ggcccaacacaagaatttttggtacttgggg |
4337544 |
T |
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| Q |
213 |
aattcaaattcgatacctagagaagagcacgctcctagatcccaagtcttcagaccacaaagccaactcctgggggttttaatttgagtaagcacgaact |
312 |
Q |
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| T |
4337545 |
aattcaaattcgatacctagagaagagcacgctcctagatcccaagtcttcacaccacaaagccaactcctaggggttttaatttgagtaagcacgaatt |
4337644 |
T |
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| Q |
313 |
gttctg |
318 |
Q |
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|||||| |
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| T |
4337645 |
gttctg |
4337650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 393
Target Start/End: Complemental strand, 4132404 - 4132323
Alignment:
| Q |
312 |
tgttctgcgctgttaggttaatcccctgaaataagagaaattcgaaggataactttctggactaaaatgactgacattctat |
393 |
Q |
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|||||||||||||||| ||| || || |||||||||||||||| ||||||| |||| |||||||||||||| |||| ||||| |
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| T |
4132404 |
tgttctgcgctgttagcttagtctccagaaataagagaaattcaaaggatagctttgtggactaaaatgacagacaatctat |
4132323 |
T |
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