View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_13 (Length: 428)
Name: NF2923_low_13
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 40856511 - 40856101
Alignment:
| Q |
8 |
gatcacagactctagatgctaaaaccaaatgagttttatgagtaatcaagcagatttggtaagatacaagnnnnnnnnnnnnnnnnnnngcatgtccatc |
107 |
Q |
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| T |
40856511 |
gatcacagactctagatgctaaaaccaaatgagttttatgagtaatcaagcagatttggtaagatacaagaaaaaaatagccaaaaaaagcatgtcgatc |
40856412 |
T |
|
| Q |
108 |
caacactgtctaatacaaggataaataaaaacctttgacagtagccttgcaagatattctgagcccattttgctggccaagtgtgcgtaatcaggattgg |
207 |
Q |
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| T |
40856411 |
caacactgtctaatacaaggataaataaaaacctttgacagtagccttgcaagatattctgagcccattttgctggccaagtgtgcgtaatcaggattgg |
40856312 |
T |
|
| Q |
208 |
tggcaaaaaattcacgctctctctgccgagctgcaatcatatctacgttcttattaatatcttcctgagaacggtttacaattcccacccaaggattacg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40856311 |
tggcaaaaaattcacgctctctctgccgagctgcaatcatatctacgttcttattaatatcttcctgagaacggtttacaattcccacccaaggattacg |
40856212 |
T |
|
| Q |
308 |
aagtcgatatgatcttccttcaaggacctacaatatgacagaatgggaacattagctagcagaaattatcatgcacctgtgtaactctgtcaattaacat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40856211 |
aagtcgatatgatcttccttcaaggacctacaatatgacagaatgggaacattagctagcagaaattatcatgcacctgtgtaactctgtcaattaacat |
40856112 |
T |
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| Q |
408 |
atgtagaaaat |
418 |
Q |
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| T |
40856111 |
atgtagaaaat |
40856101 |
T |
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