View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_14 (Length: 404)
Name: NF2923_low_14
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 394
Target Start/End: Complemental strand, 40742388 - 40742015
Alignment:
| Q |
15 |
attttcaacatccaaaggattgtcacaagttcctacgacatattttttcccttttccactcatgaacaatacttcaaaatgttcagcatcattgttgaat |
114 |
Q |
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| T |
40742388 |
attttcaacatccaaaggattgtcacaagttcctacgacatgttttttcccttttccactcatgaacaatacttcaacatgttcagcatcattgttgaat |
40742289 |
T |
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| Q |
115 |
tcacaattgaaagattgttcattcttcttcaatctcttggtgtcactctcaccctcttcaacaactaaatcttcacctacaaatacaatactactattgc |
214 |
Q |
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| T |
40742288 |
tcacaattgaaagattgttcattcttcttcaatctcttggtctcactctcaccctcttcaacagctaaatcttcacctacaaatacaatactactattgc |
40742189 |
T |
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| Q |
215 |
tatccacttccttatccttgctttcttcattggttgatgatttccttttcaaactactttcaacagagtcaattgatacatgattnnnnnnnnnnnnnnn |
314 |
Q |
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| T |
40742188 |
tatccacttccttatccttgctttcttcattggttgatgatttccttttcaaactacttttaacagagtcaattgatacatgatt------ttcttcttc |
40742095 |
T |
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| Q |
315 |
nnnacaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaacagaacagaatcatccacctttg |
394 |
Q |
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| T |
40742094 |
ttcacaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaacagaacagaatcatccacctttg |
40742015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 10326160 - 10326235
Alignment:
| Q |
318 |
acaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaacagaacagaatcatccaccttt |
393 |
Q |
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| T |
10326160 |
acaatattgctttgcaatcataactacatgtaacatacaatttttatcaatcaacaaatcagaatcatccaccttt |
10326235 |
T |
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