View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_15 (Length: 403)
Name: NF2923_low_15
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 2245862 - 2245493
Alignment:
| Q |
18 |
ataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245862 |
ataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacc |
2245763 |
T |
|
| Q |
118 |
cattttccccagtgtctctgtctcactcctctgtatagcttcttcttacaagggttcattaaagaagtgaacgaacttgaaattgaagttgaatttgttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2245762 |
cattttccccagtgtctctgtctcactcctctgtatagcttcttcttacaagggttcaccaaagaagtgaacgaacttgaaattgaagttgaatttgttg |
2245663 |
T |
|
| Q |
218 |
tgtataatgaagggtttagtagagatagagattgatttgaaaatgaagacggaacgaatgagccgtttaatcggctttcttcgtagaatttttgtaaaat |
317 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245662 |
tgtataatgaaggggttagtag------agattgatttgaaaatgaagaaggaacgaatgagccgtttaatcggctttcttcgtagaatttttgtaaaat |
2245569 |
T |
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| Q |
318 |
atctctctggcgaaggtaaacagaggaacctaaaggttcaaaatttgaacagcccaagaaggttgtgctgtctgtg |
393 |
Q |
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| T |
2245568 |
atctctctggcgaaggtaaacagaggaacctaaaggttcaaaatttgaacagcccaagaaggttgtgctgtctgtg |
2245493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 25986030 - 25985946
Alignment:
| Q |
50 |
cttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtct |
134 |
Q |
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| T |
25986030 |
cttcagcagtgtcaaaagtaccaagccaaagccttgttctattcttgggtagtcttatctcagcaacccattttccccaatgtct |
25985946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 33470024 - 33469896
Alignment:
| Q |
30 |
atcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccag |
129 |
Q |
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||||||||| ||||||| ||||||| || ||| |||| |||||||| | ||| ||| |||| ||| ||||| |||||||| ||||||||||||||| |
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| T |
33470024 |
atcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagccataatcttgttcggttcttaggtagtcttatctcagcaacccattttccccag |
33469925 |
T |
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| Q |
130 |
tgtctctgtctcactcctctgtatagctt |
158 |
Q |
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| T |
33469924 |
tgcctttgtctcactcctctgtatagctt |
33469896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 33719007 - 33718963
Alignment:
| Q |
105 |
aatctcagccacccattttccccagtgtctctgtctcactcctct |
149 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
33719007 |
aatctcagcagcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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