View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2923_low_17 (Length: 389)
Name: NF2923_low_17
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 41080143 - 41079785
Alignment:
| Q |
18 |
agaaccagcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41080143 |
agaaccagcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaa |
41080044 |
T |
|
| Q |
118 |
ggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaagtaatgagagatgttgttgttggtgatgataga---a |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41080043 |
ggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaagtaatgagagatgttgttgttggtgatgatagaaata |
41079944 |
T |
|
| Q |
215 |
atgtgtgggacgattgcattgattactatccaccacactctttggccaacccattcatggagaagtacggttggattaacaatattcaagatccaagcac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41079943 |
atgtgtgggacgattgcattgattactatccaccacactctttggccaacccattcatggagaagtacggttggattaacaatattcaagatccaagcac |
41079844 |
T |
|
| Q |
315 |
tttcaaactcaaacttgctgagtttcttctcactcttaagtgagattcattatattcat |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41079843 |
tttcaaactcaaacttgctgagtttcttctcactcttaagtgagattcattatattcat |
41079785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 23077644 - 23077473
Alignment:
| Q |
25 |
gcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgaga |
124 |
Q |
| |
|
||||| ||| || ||||| | ||||||||||| || || ||||||||||||||||||| ||||| |||||||| || |||||| | ||||||||||| | |
|
|
| T |
23077644 |
gcaaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtacatggaagccaaaaagaggctaaaaaaaggtgata |
23077545 |
T |
|
| Q |
125 |
gagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaagtaatgagagatgttg |
196 |
Q |
| |
|
|||| || |||||||| || |||||||| ||||||||||| ||||| | |||||||| |||| |||||||| |
|
|
| T |
23077544 |
gagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttg |
23077473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 23073015 - 23072868
Alignment:
| Q |
49 |
ggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtg |
148 |
Q |
| |
|
|||||||| || || ||||| |||||||||||||| ||||| |||||||| || |||||| | || |||||||| |||||||| |||||||| || |||| |
|
|
| T |
23073015 |
ggtaacacttctgctagtagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtg |
23072916 |
T |
|
| Q |
149 |
ctggctttaaatgcaacagttgttattgggaagtaatgagagatgttg |
196 |
Q |
| |
|
|||| ||||||||||| ||||| | |||||||| |||| |||||||| |
|
|
| T |
23072915 |
ctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttg |
23072868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 23111322 - 23111469
Alignment:
| Q |
49 |
ggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtg |
148 |
Q |
| |
|
|||||||| || || ||||| |||||||||||||| ||||| |||||||| || |||||| | || |||||||| |||||||| |||||||| || |||| |
|
|
| T |
23111322 |
ggtaacacttctgctagtagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtg |
23111421 |
T |
|
| Q |
149 |
ctggctttaaatgcaacagttgttattgggaagtaatgagagatgttg |
196 |
Q |
| |
|
|||| ||||||||||| ||||| | |||||||| |||| |||||||| |
|
|
| T |
23111422 |
ctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttg |
23111469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 23072860 - 23072792
Alignment:
| Q |
213 |
aaatgtgtgggacgattgcattgattactatccaccacactctttggccaacccattcatggagaagta |
281 |
Q |
| |
|
|||||| ||||| ||||| |||||| | ||||||||| | ||||||| ||| || |||||||||||||| |
|
|
| T |
23072860 |
aaatgtttgggaagattgtattgataattatccaccaaagtctttggtcaatcctttcatggagaagta |
23072792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University