View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_18 (Length: 388)
Name: NF2923_low_18
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 26483898 - 26484258
Alignment:
| Q |
12 |
aaagggaaataagaatacaaagttgaaaaatagagaaaattgtgacgatgttggttccaaggaaaattcaaaaggttcagagattcaaaatcataagcct |
111 |
Q |
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| T |
26483898 |
aaagggaaataagaatacaaagttgaaaaatagagaaaattgtgatgatgttggttccaaggaaaattcaaaaggttcagagattcaaaatcataagcct |
26483997 |
T |
|
| Q |
112 |
gattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagtacacaattcttatctttcactatttttctct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26483998 |
gattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagtacacaattcttatctttcactatttttctct |
26484097 |
T |
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| Q |
212 |
taatttgtcattatttggttaacaaaatgtgattatcaatacactcataatatgtatgattataaaagttattccaacgatcatgattgattgatagtgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484098 |
taatttgtcattatttggttaacaaaatgtgattatcaatacactcataatatgtatgattataaaagttattccaacgatcatgattgattgatagtgt |
26484197 |
T |
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| Q |
312 |
aaaaacattttacatataacaattttttaatatggtttaatgctaaaattaccgttaatag |
372 |
Q |
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| T |
26484198 |
aaaaacattttacatataacaattttttaatatggtttaatgctaaaataaccgttaatag |
26484258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 54615828 - 54615899
Alignment:
| Q |
110 |
ctgattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagta |
181 |
Q |
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||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||| |
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| T |
54615828 |
ctgattacattcatgttcgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagta |
54615899 |
T |
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