View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2923_low_2 (Length: 700)

Name: NF2923_low_2
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2923_low_2
NF2923_low_2
[»] chr3 (1 HSPs)
chr3 (19-693)||(45173388-45174063)


Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 19 - 693
Target Start/End: Complemental strand, 45174063 - 45173388
Alignment:
Q  19 aacaccgtacaaaataaggagagttgcggcaattttaggtgccattaaatgccgtggctcaaattgccactattttacgttggttccacttatgtcatgg 118  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45174063 aacactgtacaaaacaaggagagttgcggcaattttaggtgccataaaatgtcgtggctcaaattgccactattttacgctggttccacttatgtcatgg 45173964  T
Q  119 atacaggcactgttagcacctattgtggcggttttaacacctgccgcacaactgttggaaacgacctataacattttatatttgtgtttgtgaccatgta 218  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45173963 atacaggcactgtcagcacctattgtggcggtttgaacacctgccgcacaactgttggaaacgacctataacattttatatttgtgtttgtgaccatgta 45173864  T
Q  219 ag-annnnnnngtttaaattaatgtaacttactaatataactaatctttatacataataccgtaattttgttgaaaatctaaggtgtatagtttttgtca 317  Q
    || |       ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45173863 agcatttttttgtttaaattaatgtaacatgctaatataactaatctttatacataataccgtaattttgttgaaaatctaaggtgtatagtttttgtca 45173764  T
Q  318 aatctacattgttgatttgtcacacagtaatttggttaaactcgcagtaaatacaaacatgcactaaattttgctttctagcaaattggaaatgccttaa 417  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45173763 aatctacattgttgatttgtcacacagtaattttgttaaactcgcagtaaatacaaacatgcactaaattttgctttctagcaaattggaaatgccttaa 45173664  T
Q  418 aaagtatggagnnnnnnnnngttaagggataaaaagtttggacctatcctgttttatttttcccctttcacgaaaagtgtttaaagtgttatcttgggac 517  Q
    |||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45173663 aaagtatggagtttttttttgttaagggataaaaagtttggagctatcctgttttatttttcccctttcacgaaaagtgtttaaagtgttatcttgggac 45173564  T
Q  518 atataaacctgaggaagggatatttcagttttatgttataccgtgttcatactcttatcattcatgttttcgtcggttttaagaatataaagataaaaag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45173563 atataaacctgaggaagggatatttcagttttatgttataccgtgttcatactcttatcattcatgttttcgtcggttttaagaatataaagataaaaag 45173464  T
Q  618 aataaactcgattgaacaatgtccataccttcaataaattgaaagacaacaatatccaacgaccatacctatgctt 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45173463 aataaactcgattgaacaatgtccataccttcaataaattgaaagacaacaatatccaatgaccatacctatgctt 45173388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University