View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_20 (Length: 365)
Name: NF2923_low_20
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_20 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 18427005 - 18427360
Alignment:
| Q |
1 |
cacctacttcaaccatgcatgttttatttctctcactttgtttagcaagttcaagaatcttctccattgatggttgaaaacaattaggaagctcaagatt |
100 |
Q |
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|||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18427005 |
cacctacttcaaccatgcatattctatttctgtcactttgtttagcaagttcaagaatcttctccattgatgcttgaaaacaattaggaagctcaagatt |
18427104 |
T |
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| Q |
101 |
cttgacaagtttttgaagatggattctattgagaggagattttggagattgaatttgattatcaaccactttggcttcatttgataaaatccatgctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18427105 |
cttgacaagtttttgaagatggattctattgagaggagattttggagattgaatttgattatcaaccactttggcttcatttgataaaatccatgctttg |
18427204 |
T |
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| Q |
201 |
attagcctttgaagtgtgtgatttggagtcaaatattctgaacttcttggtagtgattgatttgttaccggacatacacaaattttggctttcattaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18427205 |
attagcctttgaagtgtgtgatttggagtcaaatattctgaacttcttggtagtgattgatttgttaccggacatacacaaattttggctttcattaacc |
18427304 |
T |
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| Q |
301 |
atttttcaatgctttttctatcgtatgttattcctgtcactgttgtcacaggttct |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18427305 |
atttttcaatgctttttctatcgtatgttattcctgtcactgttgtcacaggttct |
18427360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 124259 - 124075
Alignment:
| Q |
1 |
cacctacttcaaccatgcatgttttatttctctcactttgtttagcaagttcaagaatcttctccattgatggttgaaaacaattaggaagctcaagatt |
100 |
Q |
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||||||||||||||||||||||| | ||||||||| | |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
124259 |
cacctacttcaaccatgcatgttctgtttctctcagtctgtttagcaacttcaagaatcttctccattgatgcttgaaatcaattaggaagctctagatt |
124160 |
T |
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| Q |
101 |
cttgacaagtttttgaagatggattctattgagaggagattttggagattgaatttgattatcaaccactttggcttcatttgat |
185 |
Q |
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| T |
124159 |
cttgacaagtttttggagatggattctattgagaggagattttggagattgaatttgatgatcaaccactttggcttcatttgat |
124075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 124078 - 124013
Alignment:
| Q |
254 |
tgattgatttgttaccggacatacacaaattttggctttcattaaccatttttcaatgctttttct |
319 |
Q |
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| T |
124078 |
tgattgttttgttaccggacacaaacaaattttggcttttgttaaccacttttagatgctttttct |
124013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 13526904 - 13526720
Alignment:
| Q |
1 |
cacctacttcaaccatgcatgttttatttctctcactttgtttagcaagttcaagaatcttctccattgatggttgaaaacaattaggaagctcaagatt |
100 |
Q |
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||||||||| ||||||||||||| | |||||||| | |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| || || |
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| T |
13526904 |
cacctactttaaccatgcatgttctgtttctctcggtctgtttagcaacttcaagaatcttctccattgatgcttgaaatcaattaggaagctctaggtt |
13526805 |
T |
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| Q |
101 |
cttgacaagtttttgaagatggattctattgagaggagattttggagattgaatttgattatcaaccactttggcttcatttgat |
185 |
Q |
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| T |
13526804 |
cttgacaagtttttggagatggattctattgagaggagattttggagactgaatttgatgatcaaccactttggcttcatttgat |
13526720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 13626134 - 13625942
Alignment:
| Q |
1 |
cacctacttcaaccatgcatgttttatttctctcactttgtttagcaagttcaagaatcttctccattgatggttgaaaacaattaggaagctcaagatt |
100 |
Q |
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||||||||||||||||||||||| | ||||||||| | |||||| ||| |||| |||||||||||||||||| |||||| ||||| |||| ||| ||||| |
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| T |
13626134 |
cacctacttcaaccatgcatgttctgtttctctcattctgtttaccaacttcacgaatcttctccattgatgcttgaaagcaatttggaaactctagatt |
13626035 |
T |
|
| Q |
101 |
cttgacaagtttttgaagatggattctattgagaggagattttggagattgaatttgattatcaaccactttggcttcatttgataaaatcca |
193 |
Q |
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||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| || ||||||| |
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| T |
13626034 |
cttgacaagtttttggagatggattctactgagaggattttttggagattgaatttgatgatcaaccactttggcttcattttatgaaatcca |
13625942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 351
Target Start/End: Complemental strand, 13625930 - 13625834
Alignment:
| Q |
255 |
gattgatttgttaccggacatacacaaattttggctttcattaaccatttttcaatgctttttctatcgtatgttattcctgtcactgttgtcacag |
351 |
Q |
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||||| |||||| ||||||| | ||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
13625930 |
gattgttttgttgccggacacaaacaaattttggctttcatttaccacttttcgatgctttttctgtcgtatgttatgtttgtcgctgttgtcacag |
13625834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 13526723 - 13526658
Alignment:
| Q |
254 |
tgattgatttgttaccggacatacacaaattttggctttcattaaccatttttcaatgctttttct |
319 |
Q |
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|||||| |||||||||||||| | ||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
13526723 |
tgattgttttgttaccggacacaaacaaattttggcttttgttaaccacttttcgatgctttttct |
13526658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 21767062 - 21766898
Alignment:
| Q |
1 |
cacctacttcaaccatgcatgttttatttctctcactttgtttagcaagttcaagaatcttctccattgatggttgaaaacaattaggaagctcaagatt |
100 |
Q |
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||||||||||||||| ||||||| | ||||||||| | |||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||| ||||| |
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| T |
21767062 |
cacctacttcaaccacgcatgttctgtttctctcattctgtttagcaacttcaagaatcttctccattgatgcttgaaagcaatttggaagctctagatt |
21766963 |
T |
|
| Q |
101 |
cttgacaagtttttgaagatggattctattgagaggagattttggagattgaatttgattatcaa |
165 |
Q |
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||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
21766962 |
cttgacaagtttttggagatgaattctatttttaggagattttggagattgaatttgatgatcaa |
21766898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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