View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_22 (Length: 323)
Name: NF2923_low_22
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 4540188 - 4539892
Alignment:
| Q |
18 |
agatcatttcacgtagactcgtataatggttatttacttatttaccccttgagatgcctgaaatgacaatgttttaatgatttttaaaatgaaaaatgta |
117 |
Q |
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| T |
4540188 |
agatcatttcacgtagactcgtataatggttatttacttatttaccccttgagatgcctgaaatgacaatgttttaatgatttttaaaatgaaaaatgta |
4540089 |
T |
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| Q |
118 |
acagctaaatgataaggttccatagtgcactaaacattaacctcgcagttttagcactagactccacagatgctgcaaatcgtgtcttagtgagggtatt |
217 |
Q |
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| T |
4540088 |
acagctaaatgataaggttccatagtgcactaaacattaacctcgcagttttagcactagactccacagatgctgcaaatcgtgtcttagtgagggtatt |
4539989 |
T |
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| Q |
218 |
ttaggtattttcctattaaaatagatgaaaaccttctcgtggcgctgtctctcgacctcgcgcttctctctctggcgactgtcttccatctctgtgc |
314 |
Q |
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| T |
4539988 |
ttaggtattttcctattaaaatagatgaaaaccttctcgtggcgctgtctctcgacctcacgcttctctctctggcgactgtcttccatctctgtgc |
4539892 |
T |
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Back To:
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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 6421680 - 6421600
Alignment:
| Q |
110 |
aaaatgtaacagctaaatgataaggttccatagtgcactaaacattaacctcgcagttttagcactagactccacagatgc |
190 |
Q |
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|||||| ||||||||||||||||| | ||||| | |||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
6421680 |
aaaatgcaacagctaaatgataagtctttgtagtgtattaaacattaacctcacagttgtagcactggactccacagatgc |
6421600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 7737545 - 7737579
Alignment:
| Q |
149 |
aaacattaacctcgcagttttagcactagactcca |
183 |
Q |
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| T |
7737545 |
aaacattaacctcgcagttgtagcactagactcca |
7737579 |
T |
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