View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_23 (Length: 307)
Name: NF2923_low_23
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_23 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 7099359 - 7099053
Alignment:
| Q |
1 |
acaatgggcttgaacctaataattatactattatacccatcttaatcattcattacatcgaggatcaaatgaaggcgttaaaaaattgacctagtgcaat |
100 |
Q |
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| T |
7099359 |
acaatgggcttgaacctaataattatactattatacccatcttaatcattcattacatcgaggatcaaatgaaggcgttaaaaaattgacctggtgcaat |
7099260 |
T |
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| Q |
101 |
gttggaacctaaggtacacgcataacttgatctaaccttcattcgtatacccctctcaaccggatttacctggaacttattggcaatagtgagttattan |
200 |
Q |
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| T |
7099259 |
gttggaacctaaggtacacgcataacttgatctaaccttcattcgtatacccttatcaaccggatttacctggaacttattggcaatagtgagttattat |
7099160 |
T |
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| Q |
201 |
nnnnnngtttgtcttcatgacaaattgataatcttgcttaggatttatatttgcaagttttgtataagtcttgttgggctcaaatggggttttcccgcat |
300 |
Q |
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| T |
7099159 |
ttttttgtttgttttcatgacaaattgataatcttgcttagaatttatatttgcaagttttgtataagtcttattgggctcaaatggggttttcccgcat |
7099060 |
T |
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| Q |
301 |
gatttct |
307 |
Q |
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| T |
7099059 |
gatttct |
7099053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 255
Target Start/End: Complemental strand, 7085673 - 7085493
Alignment:
| Q |
72 |
aaggcgttaaaaaattgacctagtgcaatgttggaacctaaggtacacgcataacttgatctaacct-tcattcgtatacccctctcaaccggatttacc |
170 |
Q |
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|||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||||| || | |||||||| | |
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| T |
7085673 |
aaggcgttgaaaaattgacctagtataatgttgggacctaaggtacacacataacttgatctaacctgtcattcgtacacccc-atccaacggatttatc |
7085575 |
T |
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| Q |
171 |
tggaacttattggcaatagtgagttattannnnnnngtttgtcttcatgacaaattgataatcttgcttaggatttatatttgca |
255 |
Q |
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| T |
7085574 |
tggaacttaggagcgatagtgagttaat---ttcttttttatcttcatgataaattgataatcttacttaggatttatatgtgca |
7085493 |
T |
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