View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2923_low_24 (Length: 297)
Name: NF2923_low_24
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 13077681 - 13077550
Alignment:
| Q |
147 |
ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13077681 |
ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc |
13077582 |
T |
|
| Q |
247 |
aaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13077581 |
aaaatggccccttcccagtcaaatcctcagat |
13077550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 13078741 - 13078611
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13078741 |
tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacggaataatattgcagaacttcgagggtctgcacctccctattgcca |
13078642 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13078641 |
aaatggccccttcccagtcaaatcctcagat |
13078611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 30088006 - 30087872
Alignment:
| Q |
15 |
acatcatcaactgttgcaggtaactgt--tatttttattgttttttatatagacaaatagtaacaaattatgttagtttcttggttagtactctcagctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30088006 |
acatcatcaactgttgcaggtaactgtgttatttttattgttttttacatagacaaatagtaacaaattatgttagtttcttggttagtactctcagctt |
30087907 |
T |
|
| Q |
113 |
actatcgagttgtctgcttcggacttcaggtaact |
147 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30087906 |
actatcgagttgtttgcttcggacttcaggtaact |
30087872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 30091898 - 30091852
Alignment:
| Q |
102 |
actctcagcttacta-tcgagttgtctgcttcggacttcaggtaact |
147 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
30091898 |
actctcagcttactaatcgagctgtctgcttcggacttcaggtaact |
30091852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 147 - 278
Target Start/End: Original strand, 39984803 - 39984934
Alignment:
| Q |
147 |
ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39984803 |
ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc |
39984902 |
T |
|
| Q |
247 |
aaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39984903 |
aaaatggccccttcccagtcaaatcctcagat |
39984934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 147 - 278
Target Start/End: Original strand, 39983742 - 39983873
Alignment:
| Q |
147 |
ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39983742 |
ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc |
39983841 |
T |
|
| Q |
247 |
aaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39983842 |
taaatggccccttcccagtcaaatcctcagat |
39983873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 41968188 - 41968317
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41968188 |
tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagat-aatattgcagaacttcgagggtctgcacctccctattgcca |
41968286 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41968287 |
aaatggccccttcccagtcaaatcctcagat |
41968317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 14414340 - 14414236
Alignment:
| Q |
152 |
agaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaat |
251 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||| ||||| |||| |||||||| |||| |||||||||| ||||||||||| |||||| | ||||||| |
|
|
| T |
14414340 |
agaaaccaactgatatagaagaaggaaataggggaaatc--tttgtttacagaatgatatggcagaacttctagggtctgcacgtccctaatcccaaaat |
14414243 |
T |
|
| Q |
252 |
ggcccct |
258 |
Q |
| |
|
||||||| |
|
|
| T |
14414242 |
ggcccct |
14414236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 14684707 - 14684576
Alignment:
| Q |
147 |
ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14684707 |
ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc |
14684608 |
T |
|
| Q |
247 |
aaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14684607 |
aaaatggccccttcccagtcaaatcctcagat |
14684576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 21306563 - 21306432
Alignment:
| Q |
147 |
ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21306563 |
ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc |
21306464 |
T |
|
| Q |
247 |
aaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21306463 |
aaaatggccccttcccagtcaaatcctcagat |
21306432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 14685767 - 14685637
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14685767 |
tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca |
14685668 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14685667 |
aaatggccccttcccagtcaaatcctcagat |
14685637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 30246608 - 30246478
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30246608 |
tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca |
30246509 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30246508 |
aaatggccccttcccagtcaaatcctcagat |
30246478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 40421531 - 40421400
Alignment:
| Q |
147 |
ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc |
246 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40421531 |
ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagagtaatattgcagaacttcgagggtctgcacctccctattgcc |
40421432 |
T |
|
| Q |
247 |
aaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40421431 |
aaaatggccccttcccagtcaaatcctcagat |
40421400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 4517243 - 4517373
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4517243 |
tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacatcgagggtctgcacctccctattgcca |
4517342 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4517343 |
aaatggccccttcccagtcaaatcctcagat |
4517373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 21307619 - 21307489
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21307619 |
tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca |
21307520 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
21307519 |
aaaaggccccttcccagtcaaatcctcagat |
21307489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 40422589 - 40422459
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40422589 |
tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca |
40422490 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40422489 |
aaatggccccttcccagtcaaatcctcagat |
40422459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 147 - 278
Target Start/End: Original strand, 8090040 - 8090171
Alignment:
| Q |
147 |
ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8090040 |
ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc |
8090139 |
T |
|
| Q |
247 |
aaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8090140 |
aaaatggccccttcccagtcaaatcctcagat |
8090171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 27962617 - 27962747
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
27962617 |
tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca |
27962716 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27962717 |
aaatggccccttcccagtcaaatcctcagat |
27962747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 48907301 - 48907431
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48907301 |
tgatagaaatcaattgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattacca |
48907400 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
48907401 |
aaatggccccttcccagtcaaatccttagat |
48907431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 172880 - 172990
Alignment:
| Q |
168 |
agaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtca |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
172880 |
agaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtca |
172979 |
T |
|
| Q |
268 |
aatcctcagat |
278 |
Q |
| |
|
||||||||||| |
|
|
| T |
172980 |
aatcctcagat |
172990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 45036163 - 45036293
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45036163 |
tgatagaaatcaactgatatagaagaataaaatagggaaaattcctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca |
45036262 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45036263 |
aaatggccccttcccagtcaaatcctcagat |
45036293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 6540576 - 6540708
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgc-- |
245 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
6540576 |
tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca |
6540675 |
T |
|
| Q |
246 |
caaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
6540676 |
caaaatggccccttcccagtcaagtcctcagat |
6540708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 13255714 - 13255585
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| | || ||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13255714 |
tgatagaaaccaactgatatagaagaataaatttggtaaattcc-tttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca |
13255616 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13255615 |
aaatggccccttcccagtcaaatcctcagat |
13255585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 147 - 278
Target Start/End: Original strand, 54938828 - 54938959
Alignment:
| Q |
147 |
ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc |
246 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54938828 |
ttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcc |
54938927 |
T |
|
| Q |
247 |
aaaatggccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
54938928 |
aaaatggccccttcccagtcaaatcctcagat |
54938959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 148 - 268
Target Start/End: Original strand, 54937788 - 54937908
Alignment:
| Q |
148 |
tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca |
247 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54937788 |
tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcta |
54937887 |
T |
|
| Q |
248 |
aaatggccccttcccagtcaa |
268 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
54937888 |
aaatggccccttcccagtcaa |
54937908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 153 - 278
Target Start/End: Original strand, 28889748 - 28889873
Alignment:
| Q |
153 |
gaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatg |
252 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
28889748 |
gaaaccaactgatatagaagaatgaaatagggaaaatccatttgattacagaataatatcgcagaactttgagggtctgcaactccctaatgccaaaatg |
28889847 |
T |
|
| Q |
253 |
gccccttcccagtcaaatcctcagat |
278 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28889848 |
accccttcccagtcaaatcctcagat |
28889873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 5033290 - 5033188
Alignment:
| Q |
171 |
agaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtcaaat |
270 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || || |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5033290 |
agaataaaatagggaaa-tccctttgattacagaa-aacatcacagaactttgaggctctgcacctccctat-gccaaaatggccccttcccagtcaaat |
5033194 |
T |
|
| Q |
271 |
cctcag |
276 |
Q |
| |
|
|||||| |
|
|
| T |
5033193 |
cctcag |
5033188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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