View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2923_low_25 (Length: 296)
Name: NF2923_low_25
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 8087545 - 8087805
Alignment:
| Q |
10 |
attattctcctaaaatgaaatacacaataaggatttatttactatatgtcatatttgtagtctaacgaacaaggtatacaataaaagtgattgaatataa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8087545 |
attattctcctaaaatgaaatacacaataaggatttatttactatatgtcatgtttgtggtctaatgaacaaggtatacaataaaagtgattgaatataa |
8087644 |
T |
|
| Q |
110 |
tcatatgtgttagtggcgtgtcggtgttgaagggtgttggacttcaacaccgacgacgcctttaatatgaagtataagtgctatataggtttaaagaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8087645 |
tcatatgtgttagtggcgtgtcggtg----------ttggacttcaacaccgacgatgcctttaatatgaagtataagtgctatataggtttaaagaagt |
8087734 |
T |
|
| Q |
210 |
tctagtaatatcatacttgacttgacatgatagttaaatatgattggaacttggaagctcgtgtagaaagt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8087735 |
tctagtaatatcatacttgacttgacatgatagttaaatatgattggaacttggaagcttgtgtagaaagt |
8087805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University