View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_28 (Length: 262)
Name: NF2923_low_28
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 26540797 - 26540594
Alignment:
| Q |
19 |
aggaagagatctaagccatgtgcaacttgtggttgaatgagaccaaaaggaaggttgtgaacctgaatccatatatcaagatggtccaggcttacctgtt |
118 |
Q |
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| T |
26540797 |
aggaagagacctaacccatgtgcaacttgtggttgaatgagaccaaaaggaaggttgtgaacctgaatccatatatcaagatggtccaggctcacctgtt |
26540698 |
T |
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| Q |
119 |
gggaacaaccccaagggctactctatcgac--ctagatagtaggtgtcataaagtcattgtccttcatcaagcaccttagtcacgccgagatgatgatga |
216 |
Q |
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||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
26540697 |
gggaacaaccccaggggctactctatcgaccactagatggtaggtgtcataaagtcatggtccttcatcaagcaccttagtcacgtcgagatgatgatga |
26540598 |
T |
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| Q |
217 |
tact |
220 |
Q |
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|||| |
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| T |
26540597 |
tact |
26540594 |
T |
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