View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_30 (Length: 259)
Name: NF2923_low_30
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 40519463 - 40519265
Alignment:
| Q |
18 |
atttttcatttagagtgcattgacaagtggctagtacaacaaggatcttgtcctatttgtagaacttacgttcctgaccatattaatttgtgaatagttt |
117 |
Q |
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| T |
40519463 |
atttttcatttagagtgcattgacaagtggctagtacaacaaggatcatgtcctatttgtagaacttacgttcctgaccatattaattcgtgaatagttt |
40519364 |
T |
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| Q |
118 |
cgtatttgttgtaaaatagataggttaagc-aattgggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgccaata |
216 |
Q |
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| T |
40519363 |
cgtatttgttgtaaaatagataggttaagcaaattgggaaatgataaatacagtgacaaaaattatc-aagaaaattttaagacagtgtatttgccaata |
40519265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 40508407 - 40508315
Alignment:
| Q |
18 |
atttttcatttagagtgcattgacaagtggctagtacaacaaggatcttgtcctatttgtagaacttacgttcctgaccatattaatttgtga |
110 |
Q |
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| T |
40508407 |
atttttcatttagaatgcattgacaagtggctaatccaacaaggatcatgtcccatttgtagaacttatgttgttgatcacattaattcgtga |
40508315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 34713651 - 34713594
Alignment:
| Q |
152 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg |
210 |
Q |
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| T |
34713651 |
gggaaatgatagatacagtgacaaaatttatcaa-gaaaattttaagatagtgtatttg |
34713594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 16528717 - 16528659
Alignment:
| Q |
151 |
tgggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg |
210 |
Q |
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| T |
16528717 |
tgggaaatgatagatacagcgacaacatgtatcaa-gaaaattttaagatagtgtatttg |
16528659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 19663432 - 19663375
Alignment:
| Q |
152 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg |
210 |
Q |
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| T |
19663432 |
gggaaatgatagatacagtgacaaaatttatc-aagaaaattttaagagagtgtatttg |
19663375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 14131306 - 14131248
Alignment:
| Q |
152 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgc |
211 |
Q |
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| T |
14131306 |
gggaaatgatagatacagtgacaaaatttatgaa-gaaaattttaagatagtgtatttgc |
14131248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 31264908 - 31264850
Alignment:
| Q |
152 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgc |
211 |
Q |
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| T |
31264908 |
gggaaatgatagatacagtgacaaaatttatcaaa-caaattttaagatagtgtatttgc |
31264850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 20143118 - 20143062
Alignment:
| Q |
152 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggattt |
209 |
Q |
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| T |
20143118 |
gggaaatgatagatacagtgacaaaatttatc-aagaaaatttcaagatagtgtattt |
20143062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 20125743 - 20125675
Alignment:
| Q |
149 |
attgggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgccaatacc |
218 |
Q |
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| T |
20125743 |
attgggaaatgatagatacaatgacaaattttatc-aagaaaatttgaagacagtgtatttgctaatacc |
20125675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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