View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2923_low_31 (Length: 242)

Name: NF2923_low_31
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2923_low_31
NF2923_low_31
[»] chr4 (11 HSPs)
chr4 (18-242)||(45499238-45499462)
chr4 (110-242)||(34940259-34940391)
chr4 (135-242)||(34513815-34513922)
chr4 (109-242)||(3767703-3767836)
chr4 (109-242)||(28115987-28116120)
chr4 (169-242)||(37910724-37910797)
chr4 (101-196)||(21342155-21342250)
chr4 (153-242)||(17702139-17702228)
chr4 (194-242)||(5787362-5787410)
chr4 (101-149)||(31309633-31309681)
chr4 (109-180)||(37911176-37911247)
[»] chr1 (5 HSPs)
chr1 (109-242)||(49549481-49549614)
chr1 (109-242)||(28622974-28623107)
chr1 (109-242)||(37347073-37347206)
chr1 (136-241)||(19909994-19910099)
chr1 (114-242)||(35508896-35509024)
[»] chr7 (11 HSPs)
chr7 (102-242)||(15673014-15673156)
chr7 (130-242)||(34703023-34703135)
chr7 (109-242)||(18503140-18503273)
chr7 (161-242)||(6110160-6110241)
chr7 (109-242)||(32585810-32585943)
chr7 (160-242)||(25102657-25102739)
chr7 (43-102)||(8920468-8920527)
chr7 (102-204)||(24429348-24429450)
chr7 (136-242)||(15524378-15524484)
chr7 (189-242)||(34183118-34183171)
chr7 (189-242)||(34203707-34203760)
[»] chr5 (11 HSPs)
chr5 (108-242)||(7883836-7883970)
chr5 (102-242)||(33008057-33008196)
chr5 (109-242)||(5868332-5868465)
chr5 (109-242)||(29860835-29860968)
chr5 (109-242)||(42683974-42684107)
chr5 (108-242)||(15922246-15922380)
chr5 (153-242)||(25347124-25347213)
chr5 (153-242)||(33134098-33134187)
chr5 (133-242)||(31077839-31077948)
chr5 (135-242)||(2498929-2499036)
chr5 (169-242)||(21092443-21092514)
[»] chr6 (7 HSPs)
chr6 (109-242)||(12255078-12255211)
chr6 (109-242)||(32329318-32329450)
chr6 (111-242)||(23404456-23404587)
chr6 (138-242)||(9314804-9314907)
chr6 (109-242)||(29979458-29979590)
chr6 (108-242)||(10789484-10789619)
chr6 (43-102)||(33555175-33555234)
[»] chr8 (12 HSPs)
chr8 (109-242)||(15268593-15268726)
chr8 (109-242)||(32962023-32962156)
chr8 (108-242)||(43596798-43596932)
chr8 (109-242)||(37246132-37246264)
chr8 (108-242)||(16295304-16295438)
chr8 (108-242)||(16303006-16303140)
chr8 (136-204)||(11657003-11657071)
chr8 (196-242)||(11656408-11656454)
chr8 (176-242)||(40953263-40953329)
chr8 (160-222)||(27696250-27696312)
chr8 (109-150)||(42180469-42180510)
chr8 (109-241)||(16456463-16456595)
[»] chr2 (7 HSPs)
chr2 (109-242)||(13996214-13996347)
chr2 (109-242)||(13349562-13349695)
chr2 (109-242)||(40619757-40619890)
chr2 (118-242)||(27338697-27338821)
chr2 (109-242)||(37485569-37485701)
chr2 (109-210)||(19695473-19695574)
chr2 (137-242)||(41595236-41595341)
[»] chr3 (7 HSPs)
chr3 (109-242)||(40701087-40701220)
chr3 (109-242)||(28457840-28457973)
chr3 (135-242)||(21748456-21748563)
chr3 (109-242)||(33072591-33072724)
chr3 (105-235)||(21495049-21495178)
chr3 (109-242)||(7818478-7818610)
chr3 (109-242)||(45853167-45853298)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 45499462 - 45499238
Alignment:
Q  18 gttccgcccaaggtttgcacggttttgcattgtaaatatttcctctgactatagttacagtcgaggataagtttatggctataaagggtatgtttgatgg 117  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||  || |||||     
T  45499462 gttctgcccaaggtttggacggttttgcattgtaaatattttctctaattatagttacaatcgaggataagtttatggctataaagggtccgtgtgatga 45499363  T
Q  118 tcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatc 217  Q
    ||||||||||| |||| ||||||||| ||||||  ||| |||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||    
T  45499362 tcaggatagggaggcaagatatgatatattaatcatattcttcttaaatcacatgtttgatgcaccaaaatgataggataaaataaaccatttctctatc 45499263  T
Q  218 ctatcctgactttcctttgtaattt 242  Q
    |||||||||||||||||||||||||    
T  45499262 ctatcctgactttcctttgtaattt 45499238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 34940259 - 34940391
Alignment:
Q  110 tttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatt 209  Q
    ||||||||||||||||||| | ||| |||| ||||||||||  | | ||  ||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  34940259 tttgatggtcaggatagggagacagaatataatacattaatcatgttctctttaaatctcatgtttgatgcaccaaaaggataggataaaataaaccatt 34940358  T
Q  210 tccctatcctatcctgactttcctttgtaattt 242  Q
    | | |||||||||||||||||||||||||||||    
T  34940359 ttcatatcctatcctgactttcctttgtaattt 34940391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 34513922 - 34513815
Alignment:
Q  135 gatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctt 234  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||| | ||||||||||||||||| |||||  ||||| ||||||||||||||||    
T  34513922 gatatgatacattaattatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaaataaaccatttttctatcatatcctgactttcctt 34513823  T
Q  235 tgtaattt 242  Q
    ||||||||    
T  34513822 tgtaattt 34513815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 3767703 - 3767836
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||| |  | ||||||||||||||||  |||||| |||||||  |||||||||||||||| |  ||||||||||||||||||||    
T  3767703 gtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 3767802  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||| ||||| |||  |||||||||||||| ||||    
T  3767803 ttctctatcttattttgactttcctttgtcattt 3767836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 28116120 - 28115987
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||| ||||| ||||||||| | || ||||||||||||||||  |||  | |||||||| ||| |||||||||||  |  |||| ||||||||||| |||    
T  28116120 gtttaatggtgaggatagggagccatgatatgatacattaatcatattatgcttaaatctcatatttgatgcacctaagtgataagataaaataaaccat 28116021  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || ||||||||||||| |||||||||||||||||    
T  28116020 tttcctatcctatcctaactttcctttgtaattt 28115987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 37910797 - 37910724
Alignment:
Q  169 catgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    |||||||||||||||| | ||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  37910797 catgtttgatgcaccaaagggatacgataaaataaatcattttcctatcatatcctgactttcgtttgtaattt 37910724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 21342250 - 21342155
Alignment:
Q  101 aagggtatgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggat 196  Q
    |||||| |||||||||| || ||||| | | |||||||||||||||||||  |||||| |||||||| |||||||||||||| | | |||||||||    
T  21342250 aagggtctgtttgatggccaagatagagagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcacaaaatggataggat 21342155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 17702139 - 17702228
Alignment:
Q  153 tatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    |||| |||||||||| |||||||||||||||| |  |||| |||||||||||   ||| | ||||||||| || ||||||||||||||||    
T  17702139 tatctttcttaaatctcatgtttgatgcaccaaagagataagataaaataaactgttttcttatcctatcttgtctttcctttgtaattt 17702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 5787410 - 5787362
Alignment:
Q  194 gataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  5787410 gataaaataaatcattttcctatcctatcatgattttcctttgtaattt 5787362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 31309681 - 31309633
Alignment:
Q  101 aagggtatgtttgatggtcaggatagggtggcaggatatgatacattaa 149  Q
    |||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  31309681 aagggtctgtttgatggtcaggatagggagacaggatatgatacattaa 31309633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 37911247 - 37911176
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgc 180  Q
    |||||||||||||||||||| | | ||||||||||||||||   |||||| || ||||| ||||||||||||    
T  37911247 gtttgatggtcaggatagggagacgggatatgatacattaaccatatcctactgaaatctcatgtttgatgc 37911176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 49549481 - 49549614
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||| | |||| ||||||||||||||||  |||||| |||||||| ||| |||||||||||| | |||||||||||||||||||||    
T  49549481 gtttgatggtcaggatagtgaggcaagatatgatacattaatcatatcctgcttaaatctcatatttgatgcaccaaagggataggataaaataaatcat 49549580  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||||| ||||||||||||||||||||||||    
T  49549581 ttccctatcatatcctgactttcctttgtaattt 49549614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 28623107 - 28622974
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||| | || ||||||||||||||||  ||||||  ||||||  |||||||||||||||| | |||||| ||||||||||  ||    
T  28623107 gtttgatggtcaggatagggagacatgatatgatacattaatcatatcctatttaaattccatgtttgatgcaccaaagggatagaataaaataaactat 28623008  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||  ||||||||||||||||||||||||||||||    
T  28623007 ttttctatcctatcctgactttcctttgtaattt 28622974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 37347206 - 37347073
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||| | ||| |||||||||||||||  |||| | ||||||||  ||||||||||||||| | ||||| ||||||||||| |||    
T  37347206 gtttgatggtcaggatagggagacagaatatgatacattaatcatatcttgcttaaatcttatgtttgatgcaccaaagggatatgataaaataaaccat 37347107  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||  |||||||||||||| |||||||||||||||    
T  37347106 ttttctatcctatcctgattttcctttgtaattt 37347073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 19909994 - 19910099
Alignment:
Q  136 atatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttccttt 235  Q
    |||||||||||||||| |||  | |||||||  ||||||||||||| || |  |||| ||||||||||| |||||  ||||| ||| |||||||||||||    
T  19909994 atatgatacattaattatattgtgcttaaatatcatgtttgatgcatcaaagagataagataaaataaaccatttttctatcgtatactgactttccttt 19910093  T
Q  236 gtaatt 241  Q
     |||||    
T  19910094 ataatt 19910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 35509024 - 35508896
Alignment:
Q  114 atggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccc 213  Q
    ||||||| ||||||| | ||| |||||||| ||| ||  |||  | |||||||| |||||||||| ||| | |  |||||||||||||||| ||||| |     
T  35509024 atggtcacgatagggagacagtatatgatatatttatcatattatacttaaatctcatgtttgatccactaaatagataggataaaataaaccattttct 35508925  T
Q  214 tatcctatcctgactttcctttgtaattt 242  Q
    ||||||||   ||||| ||||||||||||    
T  35508924 tatcctattacgacttgcctttgtaattt 35508896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 15673156 - 15673014
Alignment:
Q  102 agggtatgtttgatggtcaggatagggtggcaggatatgatacattaat--tgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaa 199  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||  | |||||| |||||||| |||||||||||||||| |  |||||||||||    
T  15673156 agggtatgtttgatggtcaagatagggaggcaggatatgatacattaatcatatatcctgcttaaatctcatgtttgatgcaccaaagagataggataaa 15673057  T
Q  200 ataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||| ||||| |||||| |||||||||||||||||| |||||    
T  15673056 ataaaccattttcctatcatatcctgactttcctttgcaattt 15673014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 34703023 - 34703135
Alignment:
Q  130 ggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactt 229  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||||||||||| ||| ||| |||||||||||  |||| |||||| |||||||||||    
T  34703023 ggcagaatatgatacattaatcatatcctgcttaaatcacatgtttgatgcaccaaaagtatatgataaaataaactattttcctatcatatcctgactt 34703122  T
Q  230 tcctttgtaattt 242  Q
    |||||||||||||    
T  34703123 tcctttgtaattt 34703135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 18503273 - 18503140
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||| ||||| | |   |||||||||||||||||  |||||| |||||||  |||||||||||||||| |  |||||||||||||||| |||    
T  18503273 gtttgatggtcatgatagagagatcggatatgatacattaatcatatcctgcttaaatatcatgtttgatgcaccaaagagataggataaaataaaccat 18503174  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || ||||||||||||||| |||| ||||||||||    
T  18503173 tttcctatcctatcctgattttcatttgtaattt 18503140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 6110160 - 6110241
Alignment:
Q  161 ttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||| ||||||||||||| || | ||||| |||||||||||||||||  |||||||||| | |||||||||||||||||    
T  6110160 ttaaatctcatgtttgatgcatcaaagggataagataaaataaatcatttttctatcctatcttaactttcctttgtaattt 6110241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 32585943 - 32585810
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    ||||||||| || ||||||| ||||  ||||||||||  |||  ||||||  ||||||| ||||||||||||| || || |||| |||||||||||| ||    
T  32585943 gtttgatggccacgatagggaggcaaaatatgatacaagaatcatatcctgtttaaatctcatgtttgatgcaacaaaatgatatgataaaataaataat 32585844  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || |||||| ||| ||||| |  |||||||||||    
T  32585843 tttcctatcttattctgacatgtctttgtaattt 32585810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 25102657 - 25102739
Alignment:
Q  160 cttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    |||||||| |||||||||||||||| |  ||||||||||||||||| |||| | ||||||||| ||| || | ||||||||||    
T  25102657 cttaaatctcatgtttgatgcaccaaatagataggataaaataaattattttcgtatcctatcgtgaattacttttgtaattt 25102739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 8920527 - 8920468
Alignment:
Q  43 tgcattgtaaatatttcctctgactatagttacagtcgaggataagtttatggctataaa 102  Q
    |||||||||||| |||||| |||||||||||||| || ||||||| |||||| |||||||    
T  8920527 tgcattgtaaatgtttcctttgactatagttacaatctaggataaatttatgactataaa 8920468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 24429450 - 24429348
Alignment:
Q  102 agggtatgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaat 201  Q
    ||||| ||||||||||||||||||| | |  | ||||||| | ||  ||  ||||||  |||||||||||||||||||||| | | ||||||||||||||    
T  24429450 agggtttgtttgatggtcaggatagagagttaagatatgacatatctatcatatcctgtttaaatcacatgtttgatgcactaaagggataggataaaat 24429351  T
Q  202 aaa 204  Q
    |||    
T  24429350 aaa 24429348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 15524378 - 15524484
Alignment:
Q  136 atatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttccttt 235  Q
    |||||||||||| ||  |||| | |||||||| ||| ||||| ||| || || |||| ||||||| ||||||||| | |||| ||||| ||| ||| |||    
T  15524378 atatgatacatttatcatatcatgcttaaatctcatttttgaggcaacaaaaagatatgataaaaaaaatcattttcttatcatatcccgacattcattt 15524477  T
Q  236 gtaattt 242  Q
    |||||||    
T  15524478 gtaattt 15524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 34183118 - 34183171
Alignment:
Q  189 gataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||||||||||||  ||||  ||||||||||||||||| ||||| ||||||    
T  34183118 gataggataaaataaactatttttctatcctatcctgacttgcctttataattt 34183171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 34203707 - 34203760
Alignment:
Q  189 gataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||||||||||||  ||||  ||||||||||||||||| ||||| ||||||    
T  34203707 gataggataaaataaactatttttctatcctatcctgacttgcctttataattt 34203760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 7883970 - 7883836
Alignment:
Q  108 tgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatca 207  Q
    ||||||||||||||||||||| | |||||||||||||||||||  |||||| ||||||||  |||||||||||| || | ||||||||||||||||| ||    
T  7883970 tgtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttatgtttgatgcatcaaagggataggataaaataaacca 7883871  T
Q  208 tttccctatcctatcctgactttcctttgtaattt 242  Q
    ||| |||||||||| |||| |||||||||||||||    
T  7883870 ttttcctatcctattctgaatttcctttgtaattt 7883836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 33008196 - 33008057
Alignment:
Q  102 agggtatgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaat 201  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||  || |||||||  |||| | ||||||||||||||    
T  33008196 agggtctgtttgatggtcaggatagggagacaggatatgatacattaattatatcctgcttaaatatcacgtttgatagaccaaagggataggataaaat 33008097  T
Q  202 aaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    |||||||||  ||||| ||||||||||||||||||||||||    
T  33008096 aaatcattt-tctatcatatcctgactttcctttgtaattt 33008057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 5868465 - 5868332
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||| | || ||||||||| ||||||   ||||| |||||||| |||||||||||||||| |  |||||||||||||||| |||    
T  5868465 gtttgatggtcaggatagggagacaagatatgatatattaatcacatcctacttaaatctcatgtttgatgcaccaaagagataggataaaataaaccat 5868366  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || |||||||||||| ||||||||||||||||||    
T  5868365 tttcctatcctatcccgactttcctttgtaattt 5868332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 29860835 - 29860968
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    ||||||||| ||| |||||| | || ||||||||||||||||  ||| || |||||||  |||||||||||||||| |  |||||||||||||||| |||    
T  29860835 gtttgatggccagtatagggagacatgatatgatacattaatcatattctgcttaaatttcatgtttgatgcaccaaagagataggataaaataaaccat 29860934  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||||| |||| |||||||||||||||||||    
T  29860935 ttccctatcatatcatgactttcctttgtaattt 29860968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 42684107 - 42683974
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||| ||||||||| | || ||||||||||||||||  |||||| |||||||| ||||||| | ||| || | ||||| |||||||||||||||    
T  42684107 gtttgatggttaggatagggagacatgatatgatacattaatcatatcctgcttaaatctcatgtttcaagcatcaaagggataagataaaataaatcat 42684008  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||  ||||| ||||||||||||||||||||||||    
T  42684007 ttttctatcatatcctgactttcctttgtaattt 42683974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 15922380 - 15922246
Alignment:
Q  108 tgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatca 207  Q
    ||||||||||||||||||| |   |||||||||||||||||||  |||| | |||||||| ||||||||||||| || |  |||| |||||||||||| |    
T  15922380 tgtttgatggtcaggatagagatacaggatatgatacattaatcatatcttgcttaaatctcatgtttgatgcatcaaagtgatatgataaaataaatta 15922281  T
Q  208 tttccctatcctatcctgactttcctttgtaattt 242  Q
    |||  ||||| |||| |||||||||||||||||||    
T  15922280 tttttctatcatatcatgactttcctttgtaattt 15922246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 25347213 - 25347124
Alignment:
Q  153 tatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    |||||| |||||||| |||||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||    
T  25347213 tatcctccttaaatctcatgtttgatgcaccaaagggataggataaaataaaccattttcctatcatatcctgattttcctttgtaattt 25347124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 33134098 - 33134187
Alignment:
Q  153 tatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    |||||| ||||||||  |||||| |||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  33134098 tatcctgcttaaatcttatgtttaatgcaccaaagggataggataaaataaaccattttcctatcctatcctgactttcctttgtaattt 33134187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 31077839 - 31077948
Alignment:
Q  133 aggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcc 232  Q
    ||||||||||||||||||  ||| || ||||||||  ||||||||||||||| | || ||||||||||||||  |||| | ||| ||||| |||||||||    
T  31077839 aggatatgatacattaatcatattctacttaaatctaatgtttgatgcaccaaagggttaggataaaataaactattttcttattctatcatgactttcc 31077938  T
Q  233 tttgtaattt 242  Q
    ||||||||||    
T  31077939 tttgtaattt 31077948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 2498929 - 2499036
Alignment:
Q  135 gatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctt 234  Q
    ||||||||| ||||||  ||| || |||||||  |||||||||||||||  |  |||| | |||||||||||||||  ||||| |||| ||||| | |||    
T  2498929 gatatgatatattaatcatattctacttaaatatcatgtttgatgcacccaagagatatggtaaaataaatcatttttctatcttatcttgactattctt 2499028  T
Q  235 tgtaattt 242  Q
    ||||||||    
T  2499029 tgtaattt 2499036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 21092514 - 21092443
Alignment:
Q  169 catgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    |||||||||||||||| | ||||||||||||||   |||||| |||||  |||||| |||||||| ||||||||    
T  21092514 catgtttgatgcaccaaatggataggataaaat--ctcattttcctatattatcctcactttcctatgtaattt 21092443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 12255078 - 12255211
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||| | ||| |||||||||||||||  |||||| |||||||| |||||||||||||||| | |||| |||||||||||| |||    
T  12255078 gtttgatggtcaggatagggagacagaatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatgggataaaataaaccat 12255177  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || |||||||||| ||| ||||||||||||||||    
T  12255178 tttcctatcctattctgtctttcctttgtaattt 12255211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 32329318 - 32329450
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||| ||  ||||||| |||||||||||||||| ||||||| ||||||||||| |||    
T  32329318 gtttgatggtcaggatagggaggcagaatatgatacattaatcgtattctgtttaaatcgcatgtttgatgcacca-aaggatatgataaaataaaccat 32329416  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || | |||| ||||||||||||||||||||||||    
T  32329417 tttcatatcttatcctgactttcctttgtaattt 32329450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 23404456 - 23404587
Alignment:
Q  111 ttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcattt 210  Q
    ||||||| |||||||||| | || ||||||||||||||||  |||||| | |||||  |||||||||||||||| |  |||||||||||||||| |||||    
T  23404456 ttgatggccaggatagggagacatgatatgatacattaataatatcctgcataaatttcatgtttgatgcaccaaagagataggataaaataaaccattt 23404555  T
Q  211 ccctatcctatcctgactttcctttgtaattt 242  Q
    || |||| ||||||||||||||||||||||||    
T  23404556 ccatatcatatcctgactttcctttgtaattt 23404587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 9314804 - 9314907
Alignment:
Q  138 atgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgt 237  Q
    |||||||||||||  |||||| |||||||| |||||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  9314804 atgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaatggataggat-aaataaaccattttcctatcctatcctgactttcctttgt 9314902  T
Q  238 aattt 242  Q
    |||||    
T  9314903 aattt 9314907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 29979590 - 29979458
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||| ||| | ||| | |||||||||||||  |||| |  ||||||| |||||||||||||||| | ||||| ||||||||||| |||    
T  29979590 gtttgatggtcaggatcgggagacagaa-atgatacattaatcatatcatgtttaaatctcatgtttgatgcaccaaagggatatgataaaataaaccat 29979492  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || |||||| |||  ||| |||||||||||||||    
T  29979491 tttcctatcatattatgattttcctttgtaattt 29979458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 10789619 - 10789484
Alignment:
Q  108 tgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggat-aaaataaatc 206  Q
    ||||||||||||||||||  | | ||| |||||||||||||||  ||| || |||||||  ||| |||||||||| |||  |||| ||| |||||||| |    
T  10789619 tgtttgatggtcaggataaagagacagaatatgatacattaatcatattctgcttaaatttcatatttgatgcacgagagagataagataaaaataaacc 10789520  T
Q  207 atttccctatcctatcctgactttcctttgtaattt 242  Q
    |||| | |||  |||||||| |||||||||||||||    
T  10789519 attttcttattttatcctgattttcctttgtaattt 10789484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 33555175 - 33555234
Alignment:
Q  43 tgcattgtaaatatttcctctgactatagttacagtcgaggataagtttatggctataaa 102  Q
    ||||||||||| || |||| ||||| ||||||||||| |||||| |||||| ||||||||    
T  33555175 tgcattgtaaacatatcctttgactgtagttacagtctaggatatgtttatagctataaa 33555234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 15268593 - 15268726
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    ||||||||||||||||| || | |||||||||||||||||||  |||||| || ||||| |||||||||| || || | ||||||||||||||||| |||    
T  15268593 gtttgatggtcaggataaggagacaggatatgatacattaatcatatcctgctgaaatctcatgtttgatacaacaaatggataggataaaataaaccat 15268692  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || |||||||||||| ||||||||||||||||||    
T  15268693 tttcctatcctatcccgactttcctttgtaattt 15268726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 32962023 - 32962156
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||| |  | ||||||||||||||||  |||||| |||||||| ||||||||||||||||   |||||| ||||||||||  ||    
T  32962023 gtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaatgggatagaataaaataaactat 32962122  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || |||||| ||||||||||||||||||||||||    
T  32962123 tttcctatcatatcctgactttcctttgtaattt 32962156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 108 - 242
Target Start/End: Original strand, 43596798 - 43596932
Alignment:
Q  108 tgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatca 207  Q
    |||||||||| |||||||||| | |||||||||||||||||||  |||||  |||||||  |||||||||||||| | |  |||||||||||||||||||    
T  43596798 tgtttgatggccaggatagggagtcaggatatgatacattaatcatatccgacttaaatatcatgtttgatgcacgaaagagataggataaaataaatca 43596897  T
Q  208 tttccctatcctatcctgactttcctttgtaattt 242  Q
    |||  ||||| ||||| ||||||||||||||||||    
T  43596898 tttttctatcatatcccgactttcctttgtaattt 43596932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 37246132 - 37246264
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||| | ||||||| | || ||||||||||||||||  |||||| |||||||  |||||||||||||| | || |||||||||||||||  |||    
T  37246132 gtttgatggtaaagatagggagacatgatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaaaagataggataaaataacccat 37246231  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||| | ||| ||||||||||||||||||||    
T  37246232 ttcccta-catattctgactttcctttgtaattt 37246264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 242
Target Start/End: Original strand, 16295304 - 16295438
Alignment:
Q  108 tgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatca 207  Q
    ||||||||||||| ||||| | | ||  |||||||||||||||  |||||| |||||||  |||||||||||||| | |  ||||| ||| ||||||  |    
T  16295304 tgtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaa 16295403  T
Q  208 tttccctatcctatcctgactttcctttgtaattt 242  Q
    |||||||||| ||||||||||||||||||||||||    
T  16295404 tttccctatcatatcctgactttcctttgtaattt 16295438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 242
Target Start/End: Original strand, 16303006 - 16303140
Alignment:
Q  108 tgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatca 207  Q
    ||||||||||||| ||||| | | ||  |||||||||||||||  |||||| |||||||  |||||||||||||| | |  ||||| ||| ||||||  |    
T  16303006 tgtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaa 16303105  T
Q  208 tttccctatcctatcctgactttcctttgtaattt 242  Q
    |||||||||| ||||||||||||||||||||||||    
T  16303106 tttccctatcatatcctgactttcctttgtaattt 16303140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 11657071 - 11657003
Alignment:
Q  136 atatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaa 204  Q
    |||||||||||||||  |||||| |||||||| ||||||||||| |||| | ||||| |||||||||||    
T  11657071 atatgatacattaatcatatcctgcttaaatctcatgtttgatgtaccaaagggatatgataaaataaa 11657003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 11656454 - 11656408
Alignment:
Q  196 taaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||    
T  11656454 taaaataaaccatttttctatcctatcctgactttcctttgtaattt 11656408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 40953263 - 40953329
Alignment:
Q  176 gatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttgtaattt 242  Q
    ||||||||| |  |||| ||| |||||||||||||  ||||| ||||||||||||||||||||||||    
T  40953263 gatgcaccaaagagatatgatgaaataaatcatttttctatcatatcctgactttcctttgtaattt 40953329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 27696250 - 27696312
Alignment:
Q  160 cttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatc 222  Q
    |||||||| |||||||||||||||| | ||||| |||||||||||  |||| |||||| ||||    
T  27696250 cttaaatctcatgtttgatgcaccaaatggatatgataaaataaactattttcctatcttatc 27696312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 42180469 - 42180510
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaat 150  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  42180469 gtttgatggtcaggatagggagacagaatatgatacattaat 42180510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 16456463 - 16456595
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    ||||||||||||||||| || | |   |||||||| || |||  ||| || |||||||  |||||||||||||||| |  |||| |||||||||||  ||    
T  16456463 gtttgatggtcaggataaggagacgaaatatgatatatcaatcatattctacttaaatatcatgtttgatgcaccaaagagataagataaaataaactat 16456562  T
Q  209 ttccctatcctatcctgactttcctttgtaatt 241  Q
    ||   ||||||||||||| || | |||||||||    
T  16456563 ttttttatcctatcctgatttgcttttgtaatt 16456595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 13996347 - 13996214
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||  | | |||||||||||||||||| |||||| |||||||| |||||||||||||||| | ||| | |||||||||||||||    
T  13996347 gtttgatggtcaggataggaagacgggatatgatacattaattatatcctccttaaatctcatgtttgatgcaccaaagggacatgataaaataaatcat 13996248  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
     |  ||||| ||||||||||||||||||||||||    
T  13996247 gtttctatcatatcctgactttcctttgtaattt 13996214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 13349695 - 13349562
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |||||| |||||||| |||||||||||||||| | |||||||||||||||||  ||    
T  13349695 gtttgatagtcaggataggaagacaggatatgatacattaattatatcctacttaaatctcatgtttgatgcaccaaatggataggataaaataaacaat 13349596  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
     | | |||||| |||| |||||||||||||||||    
T  13349595 attcttatcctctcctaactttcctttgtaattt 13349562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 40619890 - 40619757
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||| | |  ||||||||||||||||||  |||||| |||||||| |||||||||||||||| | ||||| ||||||||||| |||    
T  40619890 gtttgatggtcaggatagagagataggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatatgataaaataaaccat 40619791  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||  ||||| |||||||||||||||| |||||||    
T  40619790 ttttctatcatatcctgactttccttcgtaattt 40619757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 27338697 - 27338821
Alignment:
Q  118 tcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatc 217  Q
    ||||||||||| |  ||||||||||||||||||  |||||| |||||||| |||||||||||||| | || |||| ||||||||||| |||||  |||||    
T  27338697 tcaggatagggagataggatatgatacattaatcatatcctacttaaatctcatgtttgatgcactaaaatgatatgataaaataaaccatttttctatc 27338796  T
Q  218 ctatcctgactttcctttgtaattt 242  Q
    |||||||||||||||||||||||||    
T  27338797 ctatcctgactttcctttgtaattt 27338821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 37485569 - 37485701
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||| ||||||| | | || ||||| ||| ||||||  |||||| |||||||| |||||||||||||||| || |||| ||||||||||| |||    
T  37485569 gtttgatggt-aggatagagagacaagatataatatattaatcatatcctgcttaaatctcatgtttgatgcaccaaaaagatatgataaaataaaccat 37485667  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || |||||| ||||||||||||||||||||||||    
T  37485668 tttcctatcatatcctgactttcctttgtaattt 37485701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 19695473 - 19695574
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||| ||||||||| | | |||||||||||||||||||  |||||| | |||||| |||||||||||||||| | ||||||| || |||||| |||    
T  19695473 gtttgatgatcaggatagagagacaggatatgatacattaatcatatcctacgtaaatctcatgtttgatgcaccaaatggataggctagaataaaccat 19695572  T
Q  209 tt 210  Q
    ||    
T  19695573 tt 19695574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 41595236 - 41595341
Alignment:
Q  137 tatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctttg 236  Q
    ||||||||||||||  |||| | |||||||| |||||||||||||||| |  ||| |||||||||||| ||| |  ||||| ||| |||||||||| |||    
T  41595236 tatgatacattaatcatatcgtgcttaaatctcatgtttgatgcaccaaagagattggataaaataaaccatatttctatcatattctgactttccattg 41595335  T
Q  237 taattt 242  Q
    ||||||    
T  41595336 taattt 41595341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 40701220 - 40701087
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    ||||||||||||||||||   | |||||||||||||||||||  |||||| |||||||| |||||||||||| ||| ||| ||| ||||||||||| |||    
T  40701220 gtttgatggtcaggatagaaagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgctccaaaagtatatgataaaataaaccat 40701121  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||  || || ||||||||||||||||||||||||    
T  40701120 ttttctgtcatatcctgactttcctttgtaattt 40701087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 28457973 - 28457840
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||||||| | |||||||||||||||||||  |||||| ||||||||   |||||||||||||| |  |||| ||||||||||| |||    
T  28457973 gtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttgtgtttgatgcaccaaagtgatatgataaaataaaccat 28457874  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||  ||||| |||||  |||||||||||||||||    
T  28457873 ttttctatcttatcccaactttcctttgtaattt 28457840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 21748563 - 21748456
Alignment:
Q  135 gatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcatttccctatcctatcctgactttcctt 234  Q
    ||||||||||||||||  ||| || |||||||| |||||||||||||||| || |||| |||||||| || ||||| ||||||||||  ||| |||||||    
T  21748563 gatatgatacattaatcatattctgcttaaatctcatgtttgatgcaccaaaatgatatgataaaattaaccattttcctatcctattatgattttcctt 21748464  T
Q  235 tgtaattt 242  Q
    ||||||||    
T  21748463 tgtaattt 21748456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 33072591 - 33072724
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    ||||||| |||||||||||| | ||  |||||||||||||||  ||||||  ||||||  |||||||||||||||  | | ||| ||||||||||| |||    
T  33072591 gtttgatagtcaggatagggagacaaaatatgatacattaatcatatcctatttaaatttcatgtttgatgcacctaaggaatatgataaaataaaccat 33072690  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || |||||| |||||| | |||||||||||||||    
T  33072691 tttcctatcatatcctaagtttcctttgtaattt 33072724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 21495049 - 21495178
Alignment:
Q  105 gtatgtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaa 204  Q
    |||||||||||| ||| ||||||| | || ||||||||| ||||||  |||| || ||||||| |||||||||||||||| |  ||||||||||||||||    
T  21495049 gtatgtttgatgatcacgatagggagacatgatatgatatattaatcatatc-ttgttaaatctcatgtttgatgcaccaaattgataggataaaataaa 21495147  T
Q  205 tcatttccctatcctatcctgactttccttt 235  Q
      ||||  ||||| |||| || |||||||||    
T  21495148 cgatttttctatcatatcttggctttccttt 21495178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 7818610 - 7818478
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||| |||||||    | ||||||||||||||||  ||| || |||||||| |||||||||| ||| | |  ||||| |||||||||| |||    
T  7818610 gtttgatggtcaagatagggatatatgatatgatacattaatcatattctgcttaaatctcatgtttgatacactaaagagatagaataaaataaa-cat 7818512  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    ||  ||||||||| || |||||||||||||||||    
T  7818511 tttactatcctattctaactttcctttgtaattt 7818478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 45853298 - 45853167
Alignment:
Q  109 gtttgatggtcaggatagggtggcaggatatgatacattaattgtatccttcttaaatcacatgtttgatgcaccagaaggataggataaaataaatcat 208  Q
    |||||||||||||||  ||| | ||| |||||||||||||||| ||||||||||||||| | | |||| ||||||| |   |||  |||||||||| |||    
T  45853298 gtttgatggtcagga--gggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccat 45853201  T
Q  209 ttccctatcctatcctgactttcctttgtaattt 242  Q
    || | | ||||||  ||||||||| |||||||||    
T  45853200 tttcttttcctattatgactttccattgtaattt 45853167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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