View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_35 (Length: 238)
Name: NF2923_low_35
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_35 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 41445765 - 41445541
Alignment:
| Q |
14 |
caagagctatatatgtcagctaacttcgaccttcaaggtcaacttccaaagttgagttgcagcacttcccttaatatattggatctttcacgatgtcaat |
113 |
Q |
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| T |
41445765 |
caagagctatatatgtcagctaacttcgaccttcaaggtcaacttccaaagttgagttgcagcacttcccttaatatattggatctttcacgatgtcaat |
41445666 |
T |
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| Q |
114 |
tccaagggtcaatcctacagtttttctctaacctcacacaacttaccttcttgagtctctcaggaaacaatgtaggaggtgagctaccaccatcatggct |
213 |
Q |
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| T |
41445665 |
tccaagggtcaatcctacagtttttctctaacctcacacaacttaccttcttgagtctctcaggaaacaatgtaggaggtgagctaccaccatcatggct |
41445566 |
T |
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| Q |
214 |
ttcaagccttaaacaactcactctc |
238 |
Q |
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| T |
41445565 |
ttcaagccttaaacaactcactctc |
41445541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 41433043 - 41432819
Alignment:
| Q |
14 |
caagagctatatatgtcagctaacttcgaccttcaaggtcaacttccaaagttgagttgcagcacttcccttaatatattggatctttcacgatgtcaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |||||||| |||||| |||||||| |
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| T |
41433043 |
caagagctatatatgtcagctaacttcgaccttcgaggtcaacttccaaagttgagttgcagcatttcccttactgtattggatatttcacaatgtcaat |
41432944 |
T |
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| Q |
114 |
tccaagggtcaatcctacagtttttctctaacctcacacaacttaccttcttgagtctctcaggaaacaatgtaggaggtgagctaccaccatcatggct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
41432943 |
tccaagggtcaatcctacagtttttctctaacctcacacaacttaccttcttgagtctctcaggaaacaatgtaggaggcgagctacctccatcatggct |
41432844 |
T |
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| Q |
214 |
ttcaagccttaaacaactcactctc |
238 |
Q |
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| T |
41432843 |
tacaagccttaaacaactcactctc |
41432819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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