View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_36 (Length: 222)
Name: NF2923_low_36
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 27802037 - 27802226
Alignment:
| Q |
16 |
atgaaacctaaaatgatactgccgcgtcatataaactcgagggttaatagttaattttgcaccagaatggctacaagaagtgaaggccgacactttgagg |
115 |
Q |
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| T |
27802037 |
atgaaacctaaaatgatactgccgcgtcatataaactcgagggttaatggttaattttgcaccagaatggctacaagaagtgaaggccgacactttgagg |
27802136 |
T |
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| Q |
116 |
aaattggcttgggaattaagtgtatggaacgagaatgaactagcatttctctgctacaaagaggtgggactgcagctaagggagctcttg |
205 |
Q |
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| T |
27802137 |
aaattggcttgggaattaagtgtatggaacgagaatgaactagcatttctctgctacaaagaggtgggactgcagctatgggagctcttg |
27802226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 27774971 - 27774880
Alignment:
| Q |
108 |
ctttgaggaaattggcttgggaattaagtgtatggaacgagaatgaactagca-tttctctgctacaaagaggtgggactgcagctaaggga |
198 |
Q |
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| T |
27774971 |
ctttgaggaaattggctcgggaattaagcttatgaaacgagaattatctagcactttttctgctacaaaggggtgagactgcagctatggga |
27774880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 27771492 - 27771639
Alignment:
| Q |
59 |
ttaatagttaattttgcaccagaatggctacaagaagtgaaggccgacactttgaggaaattggcttgggaattaagtgtatggaacgagaatgaactag |
158 |
Q |
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| T |
27771492 |
ttaatggttagttttgcacctgcatggcttcaagaaatgaaggtagatagtttgaggaaattggcacatggattaagcagatggaacgaacatgaactag |
27771591 |
T |
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| Q |
159 |
ca-tttctctgctacaaagaggtgggactgcagctaagggagctcttg |
205 |
Q |
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| T |
27771592 |
cactttctctattacaaagaggtgggacagcagccatgggagctcttg |
27771639 |
T |
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