View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_37 (Length: 217)
Name: NF2923_low_37
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 38247525 - 38247323
Alignment:
| Q |
1 |
tgatggtatcaaagtaaaatatgattgatttatcaaagatgaataaagacatgat---tgaaaagggtaactgaataatttacatttctgtgtattcagc |
97 |
Q |
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| T |
38247525 |
tgatggtatcaaagtaaaatatgattgatttatcaaagatgaataaagacatgatgattgaaaagggtaactgaataatttacatttctgtgtattcagc |
38247426 |
T |
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| Q |
98 |
tagctataggagaaaaacaaatttgtaattttggctgaatccactatattgtttcatatggctatgctagaagtctgttctaccatgtaacaactgtggg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247425 |
tagctataggagaaaaacaaatttgtaattttggctgaatccactatattgtttcatatggctatgctagaagtctgttctaccatgtaacaactgtggg |
38247326 |
T |
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| Q |
198 |
aag |
200 |
Q |
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||| |
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| T |
38247325 |
aag |
38247323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 38252556 - 38252412
Alignment:
| Q |
1 |
tgatggtatcaaagtaaaatatgattgatttatcaaagatgaataaagacatgattgaaaagggtaactgaataatt-tacatttctgtgtattcagcta |
99 |
Q |
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||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||| |||| |
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| T |
38252556 |
tgatggtattatggtaagatatgatcgatttatcaaagatgaataaagacatgattggaaagggtaactgaataattacacttctctgtgtattctgcta |
38252457 |
T |
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| Q |
100 |
gctataggagaaaaacaaatttgtaattttggctgaatccactat |
144 |
Q |
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| T |
38252456 |
gatataggagaaaaacaaatttgtatttttggcttaattcactat |
38252412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 38213150 - 38213038
Alignment:
| Q |
2 |
gatggtatcaaagtaaaatatgattgatttatcaaagatgaataaagacatgattgaaaagggtaactgaataattt-acatttctgtgtattcagctag |
100 |
Q |
| |
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|||||| ||||||||| ||||||||||| |||||| ||||||| ||| ||||| ||| |||||||| |||| || | ||| ||||||||||||| |
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| T |
38213150 |
gatggtgtcaaagtaatatatgattgat----caaagaggaataaatacaagattggcaagtgtaactgagaaattacacttctctttgtattcagctag |
38213055 |
T |
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| Q |
101 |
ctataggagaaaaacaa |
117 |
Q |
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||||||||||||||||| |
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| T |
38213054 |
ctataggagaaaaacaa |
38213038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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