View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2923_low_5 (Length: 574)
Name: NF2923_low_5
Description: NF2923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2923_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 10773714 - 10774049
Alignment:
| Q |
9 |
agcatagggtgtacaagtatagagtgttatctgatcactaggtcatcacaaatttctttgagaaatgtcagcaacactttcttttgaacaatctctctaa |
108 |
Q |
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| T |
10773714 |
agcatagggtgtacaagtatagagtgttatttgatcattaggtcatcacaaatttctttgagaaatatcagcaacactttcttttgaacaatctctccaa |
10773813 |
T |
|
| Q |
109 |
cactcannnnnnnattagatgaaattaaacaatttctaaactcaagttataatttataactcgaatgaatgaccaaatgtgtttacaaaatccgctctac |
208 |
Q |
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| T |
10773814 |
cacttatttttttattggatgaaattaaacaatttctaaacttaggttataatttataactcgaataaatgacgaaatgtatttacaaaatccgctctac |
10773913 |
T |
|
| Q |
209 |
tatgaaagacatttacacaattgaccgaattgcatgatcaaatc--atgtcttcttaatcacttcgtatcactattgatctctttaatttccagcagctt |
306 |
Q |
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| T |
10773914 |
tatgaaagacatttacacaattgaccgaattgcatgatcaaatcatatgtcttcttaatcacttcgtatcactattgatctctttaatttccagcagctt |
10774013 |
T |
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| Q |
307 |
tctatcaaaatatatgattaagctacccaaactgct |
342 |
Q |
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| T |
10774014 |
tctatcaaaatatatgattaagctacccaaactgct |
10774049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 374 - 558
Target Start/End: Original strand, 10774050 - 10774233
Alignment:
| Q |
374 |
gtcaaaaaccacacacacatacaatgccnnnnnnntaatacactgaaacacagaaaagaaagccaaaaacattgcagagaaagcattgcaacaaaatcca |
473 |
Q |
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| T |
10774050 |
gtcaaaaaccacacacacataca-tgccaaaaaaataatacactgaaacacagaaaagaaagccaaaaacattgcagagaaagcattgcaacaaaatcca |
10774148 |
T |
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| Q |
474 |
cagatctgctctgatttcacattgactcaatcttttaactgctagtagccactgaaatgtttttcttgctttgtctccataaacc |
558 |
Q |
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| T |
10774149 |
cagatctgctctgatttcacattgactcaatcttttaactgctagtagccactgaaatgtttttcttgctttgtcttcataaacc |
10774233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 15508909 - 15508957
Alignment:
| Q |
66 |
ttgagaaatgtcagcaacactttcttttgaacaatctctctaacactca |
114 |
Q |
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||||| ||||| ||||||||| ||||||||||| ||| ||||||||||| |
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| T |
15508909 |
ttgaggaatgttagcaacactctcttttgaacactctttctaacactca |
15508957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 13407328 - 13407364
Alignment:
| Q |
78 |
agcaacactttcttttgaacaatctctctaacactca |
114 |
Q |
| |
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| T |
13407328 |
agcaacactctcttttgaacactctctctaacactca |
13407364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 38537512 - 38537548
Alignment:
| Q |
72 |
aatgtcagcaacactttcttttgaacaatctctctaa |
108 |
Q |
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| T |
38537512 |
aatgttagcaacactttcttttgaacactctctctaa |
38537548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 39016849 - 39016805
Alignment:
| Q |
68 |
gagaaatgtcagcaacactttcttttgaacaatctctctaacact |
112 |
Q |
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||||||||| ||||||||| ||||||||||| |||||||| |||| |
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| T |
39016849 |
gagaaatgttagcaacactctcttttgaacactctctctagcact |
39016805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 27243052 - 27243088
Alignment:
| Q |
78 |
agcaacactttcttttgaacaatctctctaacactca |
114 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||| |
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| T |
27243052 |
agcaacactctcttttgaacactctctctaacactca |
27243088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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